BLASTX nr result
ID: Glycyrrhiza23_contig00034135
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00034135
(308 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containi... 192 2e-47
ref|XP_003610927.1| Pentatricopeptide repeat-containing protein ... 185 4e-45
ref|XP_002324099.1| predicted protein [Populus trichocarpa] gi|2... 166 2e-39
ref|XP_002522334.1| pentatricopeptide repeat-containing protein,... 165 3e-39
ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containi... 149 2e-34
>ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Glycine max]
Length = 693
Score = 192 bits (489), Expect = 2e-47
Identities = 92/102 (90%), Positives = 96/102 (94%)
Frame = +2
Query: 2 LSSVLAAAAAIPCLRLGKEIHGYLVRTGLNLDQVVWSALLDLYGKCGSLDEARGIFDQMV 181
LSS LAA+AAIPCLRLGKEIHGYL+RT LNLD+VVWSALLDLYGKCGSLDEARGIFDQM
Sbjct: 223 LSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMK 282
Query: 182 DRDVVSWTAMIHRCFEDGRKEEGFSLFRDLMGSGVRPNEYTF 307
DRDVVSWT MIHRCFEDGR+EEGF LFRDLM SGVRPNEYTF
Sbjct: 283 DRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTF 324
Score = 76.3 bits (186), Expect = 2e-12
Identities = 37/101 (36%), Positives = 60/101 (59%)
Frame = +2
Query: 5 SSVLAAAAAIPCLRLGKEIHGYLVRTGLNLDQVVWSALLDLYGKCGSLDEARGIFDQMVD 184
+ VL A A LGKE+HGY++ G + SAL+ +Y KCG+ AR +F++M
Sbjct: 325 AGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQ 384
Query: 185 RDVVSWTAMIHRCFEDGRKEEGFSLFRDLMGSGVRPNEYTF 307
D+VSWT++I ++G+ +E F L+ SG +P++ T+
Sbjct: 385 PDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTY 425
Score = 59.7 bits (143), Expect = 2e-07
Identities = 31/89 (34%), Positives = 50/89 (56%)
Frame = +2
Query: 5 SSVLAAAAAIPCLRLGKEIHGYLVRTGLNLDQVVWSALLDLYGKCGSLDEARGIFDQMVD 184
S+++AA L LG+ +H + + + + LLD+Y KCGSL +A+ +FD+M
Sbjct: 91 STLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGH 150
Query: 185 RDVVSWTAMIHRCFEDGRKEEGFSLFRDL 271
RD+ SW MI + GR E+ LF ++
Sbjct: 151 RDLCSWNTMIVGYAKLGRLEQARKLFDEM 179
>ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 802
Score = 185 bits (469), Expect = 4e-45
Identities = 87/102 (85%), Positives = 95/102 (93%)
Frame = +2
Query: 2 LSSVLAAAAAIPCLRLGKEIHGYLVRTGLNLDQVVWSALLDLYGKCGSLDEARGIFDQMV 181
LSS LAAAAAI LR GKEIHGYL+R+GL LD+VVW+ALLDLYGKCGSL+EARGIFDQM
Sbjct: 199 LSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMA 258
Query: 182 DRDVVSWTAMIHRCFEDGRKEEGFSLFRDLMGSGVRPNEYTF 307
D+D+VSWT MIHRCFEDGRK+EGFSLFRDLMGSGVRPNEYTF
Sbjct: 259 DKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTF 300
Score = 82.4 bits (202), Expect = 3e-14
Identities = 39/101 (38%), Positives = 62/101 (61%)
Frame = +2
Query: 5 SSVLAAAAAIPCLRLGKEIHGYLVRTGLNLDQVVWSALLDLYGKCGSLDEARGIFDQMVD 184
+ VL A A + ++GKE+HGY+ R G + SAL+ +Y KCG+ + AR +F+QM
Sbjct: 301 AGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPR 360
Query: 185 RDVVSWTAMIHRCFEDGRKEEGFSLFRDLMGSGVRPNEYTF 307
D+VSWT++I ++G+ + F L+ SG +P+E TF
Sbjct: 361 PDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITF 401
Score = 55.8 bits (133), Expect = 3e-06
Identities = 29/89 (32%), Positives = 49/89 (55%)
Frame = +2
Query: 5 SSVLAAAAAIPCLRLGKEIHGYLVRTGLNLDQVVWSALLDLYGKCGSLDEARGIFDQMVD 184
S+++AA L LGK +H + + V+ + L+ +Y KCGSL +A+ +FD++
Sbjct: 67 STLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQ 126
Query: 185 RDVVSWTAMIHRCFEDGRKEEGFSLFRDL 271
+D+ SW MI GR E+ LF ++
Sbjct: 127 KDLCSWNTMISGYANVGRIEQARKLFDEM 155
>ref|XP_002324099.1| predicted protein [Populus trichocarpa] gi|222867101|gb|EEF04232.1|
predicted protein [Populus trichocarpa]
Length = 676
Score = 166 bits (420), Expect = 2e-39
Identities = 74/102 (72%), Positives = 93/102 (91%)
Frame = +2
Query: 2 LSSVLAAAAAIPCLRLGKEIHGYLVRTGLNLDQVVWSALLDLYGKCGSLDEARGIFDQMV 181
+SS LAAAAA+PCLR+GKEIHGY++RTGL+ D+VVWSAL D+YGKCGS++EAR IFD+MV
Sbjct: 206 VSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMV 265
Query: 182 DRDVVSWTAMIHRCFEDGRKEEGFSLFRDLMGSGVRPNEYTF 307
DRD+V+WTAMI R F+DGR++EGF LF DL+ SG+RPNE+TF
Sbjct: 266 DRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTF 307
Score = 71.2 bits (173), Expect = 8e-11
Identities = 36/101 (35%), Positives = 56/101 (55%)
Frame = +2
Query: 5 SSVLAAAAAIPCLRLGKEIHGYLVRTGLNLDQVVWSALLDLYGKCGSLDEARGIFDQMVD 184
S VL A A LGK++HGY+ R G + SAL+ +Y KCG++ A +F +
Sbjct: 308 SGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQ 367
Query: 185 RDVVSWTAMIHRCFEDGRKEEGFSLFRDLMGSGVRPNEYTF 307
D+ SWT++I ++G+ +E F L+ SG +P+ TF
Sbjct: 368 PDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITF 408
>ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223538412|gb|EEF40018.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 507
Score = 165 bits (418), Expect = 3e-39
Identities = 75/102 (73%), Positives = 94/102 (92%)
Frame = +2
Query: 2 LSSVLAAAAAIPCLRLGKEIHGYLVRTGLNLDQVVWSALLDLYGKCGSLDEARGIFDQMV 181
+SSVLAAAAAIPCLR+GKEIHGY++RTGL+ D+VVWSAL D+YGKCGS++EAR IFD+MV
Sbjct: 216 VSSVLAAAAAIPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMV 275
Query: 182 DRDVVSWTAMIHRCFEDGRKEEGFSLFRDLMGSGVRPNEYTF 307
+RDVV+WTAMI R FEDGR+EEGF LF +L+ SG++PN++TF
Sbjct: 276 NRDVVTWTAMIDRYFEDGRREEGFELFAELLRSGIKPNDFTF 317
Score = 70.1 bits (170), Expect = 2e-10
Identities = 35/101 (34%), Positives = 56/101 (55%)
Frame = +2
Query: 5 SSVLAAAAAIPCLRLGKEIHGYLVRTGLNLDQVVWSALLDLYGKCGSLDEARGIFDQMVD 184
+ VL A A + +GK++HG++ R + SAL+ +Y KCG++ A +F M
Sbjct: 318 AGVLNACADLGVEGIGKQVHGHMTRADFDPFSFAASALVHMYSKCGNMVNAERVFRGMPQ 377
Query: 185 RDVVSWTAMIHRCFEDGRKEEGFSLFRDLMGSGVRPNEYTF 307
D+VSWT++I ++G +E F L+ SG RP+ TF
Sbjct: 378 PDLVSWTSLIAGYAQNGHPDEALQYFELLLKSGTRPDHITF 418
Score = 58.9 bits (141), Expect = 4e-07
Identities = 28/86 (32%), Positives = 50/86 (58%)
Frame = +2
Query: 5 SSVLAAAAAIPCLRLGKEIHGYLVRTGLNLDQVVWSALLDLYGKCGSLDEARGIFDQMVD 184
SS++ + L +GK++H ++ +G V+ + LLD+Y KC L +A+ +F++M +
Sbjct: 84 SSLIQSCLKNRALEVGKKVHDHIKLSGFIPGLVISNRLLDMYAKCNDLVDAQKLFEEMGE 143
Query: 185 RDVVSWTAMIHRCFEDGRKEEGFSLF 262
RD+ SW +I C + G +E LF
Sbjct: 144 RDLCSWNVLISGCAKMGLLKEARKLF 169
>ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like, partial [Vitis vinifera]
Length = 621
Score = 149 bits (376), Expect = 2e-34
Identities = 71/102 (69%), Positives = 87/102 (85%)
Frame = +2
Query: 2 LSSVLAAAAAIPCLRLGKEIHGYLVRTGLNLDQVVWSALLDLYGKCGSLDEARGIFDQMV 181
+SS LAA+AAI L LGKEIHG+++R GL+LD VVWSAL D+YGKCGS+ EAR IFD+ V
Sbjct: 225 MSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTV 284
Query: 182 DRDVVSWTAMIHRCFEDGRKEEGFSLFRDLMGSGVRPNEYTF 307
DRDVVSWTAMI R F++GR+EEGF+LF DL+ SG+ PNE+TF
Sbjct: 285 DRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTF 326
Score = 77.4 bits (189), Expect = 1e-12
Identities = 38/101 (37%), Positives = 58/101 (57%)
Frame = +2
Query: 5 SSVLAAAAAIPCLRLGKEIHGYLVRTGLNLDQVVWSALLDLYGKCGSLDEARGIFDQMVD 184
S VL A A LGK++HGY+ R G + S L+ +Y KCG++ AR +F+ M
Sbjct: 327 SGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPR 386
Query: 185 RDVVSWTAMIHRCFEDGRKEEGFSLFRDLMGSGVRPNEYTF 307
D+VSWT++I ++G+ +E F L+ SG +P+ TF
Sbjct: 387 PDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITF 427
Score = 56.2 bits (134), Expect = 3e-06
Identities = 29/86 (33%), Positives = 47/86 (54%)
Frame = +2
Query: 5 SSVLAAAAAIPCLRLGKEIHGYLVRTGLNLDQVVWSALLDLYGKCGSLDEARGIFDQMVD 184
S++L + L G ++H + +G V+ + +LD+Y KC SL A+ +FD+M +
Sbjct: 93 STLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEMAE 152
Query: 185 RDVVSWTAMIHRCFEDGRKEEGFSLF 262
RD+ SW MI + GR +E LF
Sbjct: 153 RDLCSWNIMISGYAKAGRLQEARKLF 178