BLASTX nr result

ID: Glycyrrhiza23_contig00034090 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00034090
         (299 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD14478.1| Strong similarity to gb|AF039376 Evelknievel retr...    69   3e-10
emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]    62   5e-08
emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]    62   6e-08
emb|CAN66863.1| hypothetical protein VITISV_013500 [Vitis vinifera]    59   4e-07
gb|AAC02666.1| polyprotein [Arabidopsis thaliana]                      57   2e-06

>gb|AAD14478.1| Strong similarity to gb|AF039376 Evelknievel retrotransposon
           polyprotein from Arabidopsis arenosa [Arabidopsis
           thaliana]
          Length = 1194

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
 Frame = +3

Query: 57  VKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINL--WHHRLGHPHLQVLKRV 230
           VK L+TG  LLQG+T+D++Y+ P++PP PS +   + P  +L  WH RLGHP L  LK V
Sbjct: 380 VKDLKTGVQLLQGRTKDELYEWPVNPPKPSSHFTTTTPKTDLTSWHSRLGHPSLSTLKVV 439

Query: 231 I------XXXXXXXXXXCPDCLASKSH 293
           +                C DCL +K+H
Sbjct: 440 VSQFSLPVSNSLQKQFNCSDCLLNKTH 466


>emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]
          Length = 1172

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
 Frame = +3

Query: 54  MVKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINLWHHRLGHPHLQVLKRVI 233
           +VK LRTGA LL+GKT+D VY+  +S P  + + V +  S + WHHRLGHP   +LK VI
Sbjct: 324 LVKDLRTGATLLKGKTKDGVYEWLVSSPLLAFSSVKT--SSSEWHHRLGHPAFPILKHVI 381

Query: 234 ------XXXXXXXXXXCPDCLASKSH 293
                           C  C  +KSH
Sbjct: 382 STNNLALSSSSLLHFSCNTCHCNKSH 407


>emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]
          Length = 590

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
 Frame = +3

Query: 54  MVKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINLWHHRLGHPHLQVLKRVI 233
           +VK  RTG +LLQG  E+ VY +P SP    +  VH   S+  WH RLGHP  +V+ R+I
Sbjct: 388 LVKDRRTGEILLQGPCENGVYPMPSSPAATPIAFVHERTSVTGWHQRLGHPSFKVVTRLI 447

Query: 234 ------XXXXXXXXXXCPDCLASKSH 293
                           C  C  +K+H
Sbjct: 448 SSFSLPTTSCLSGSNNCHSCSINKAH 473


>emb|CAN66863.1| hypothetical protein VITISV_013500 [Vitis vinifera]
          Length = 1112

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
 Frame = +3

Query: 57  VKSLRTGAVLLQGKTEDQVYKLPLS--PPFPSLNHVHSHPSINLWHHRLGHPHLQVLKRV 230
           VK L TGA+LLQG+T+D VY+ PLS     P +       +++ WHHRLGHP L + K +
Sbjct: 248 VKDLHTGAILLQGRTKDGVYEWPLSTTQSXPLIAFSSVKTTLSEWHHRLGHPSLSIFKNI 307

Query: 231 I 233
           +
Sbjct: 308 M 308


>gb|AAC02666.1| polyprotein [Arabidopsis thaliana]
          Length = 1451

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
 Frame = +3

Query: 57  VKSLRTGAVLLQGKTEDQVYKLPLSPPFPSLNHVHSHPSINL--WHHRLGHPHLQVLKRV 230
           VK L TGA LLQGKT++++Y+ P++    +       P  +L  WH RLGHP L +LK +
Sbjct: 425 VKDLSTGARLLQGKTKNELYEWPVNSSIATSMFASPTPKTDLPSWHARLGHPSLPILKAL 484

Query: 231 I------XXXXXXXXXXCPDCLASKSH 293
           I                C DC  +KSH
Sbjct: 485 ISKFSLPISHSLQNQLLCSDCSINKSH 511


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