BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00033696
         (258 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003525896.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    90   2e-16
ref|XP_003524036.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    89   3e-16
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...    88   6e-16
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...    88   6e-16
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    86   3e-15

>ref|XP_003525896.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Glycine max]
          Length = 973

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 46/73 (63%), Positives = 55/73 (75%), Gaps = 4/73 (5%)
 Frame = +1

Query: 52  RIFIQEPQWISSLFMKGLLMRKTE----EEKRRNYEALRRRQVEVETEAWERTVEEYRAL 219
           RIF+QEP W   LF+KGLLM++ E    +++R  Y  LRRRQ+E ETEAWE+ VEEYR L
Sbjct: 104 RIFVQEPPW---LFLKGLLMQEEEMRQKDKEREKYNLLRRRQIEAETEAWEKMVEEYREL 160

Query: 220 EREMRVKHLAPNL 258
           EREMR K LAPNL
Sbjct: 161 EREMREKMLAPNL 173


>ref|XP_003524036.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Glycine max]
          Length = 1043

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 47/73 (64%), Positives = 54/73 (73%), Gaps = 4/73 (5%)
 Frame = +1

Query: 52  RIFIQEPQWISSLFMKGLLMRKTEE----EKRRNYEALRRRQVEVETEAWERTVEEYRAL 219
           RIF+QEP W   LF+KGLLM++ E     ++R  Y  LRRRQ+E ETEAWER VEEYR L
Sbjct: 174 RIFVQEPPW---LFLKGLLMQEEEMRQKGKEREKYNLLRRRQIEAETEAWERMVEEYREL 230

Query: 220 EREMRVKHLAPNL 258
           EREMR K LAPNL
Sbjct: 231 EREMREKMLAPNL 243


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic;
           AltName: Full=NictaRpoT3-tom; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3B;
           Flags: Precursor gi|21425667|emb|CAC95021.2| chloroplast
           RNA polymerase [Nicotiana tabacum]
          Length = 977

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 10/80 (12%)
 Frame = +1

Query: 49  RRIFIQEPQWISSLFMKGLLMRKT----------EEEKRRNYEALRRRQVEVETEAWERT 198
           +R+FIQ+P W+SSLFM  L +R            E E+RR Y  LRRRQ++ ETEAWE+ 
Sbjct: 98  KRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQM 157

Query: 199 VEEYRALEREMRVKHLAPNL 258
           VEEYR LEREM  K LAPNL
Sbjct: 158 VEEYRELEREMCEKKLAPNL 177


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic;
           AltName: Full=NsRpoT-C; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3;
           Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC
           RecName: Full=DNA-directed RNA polymerase 3A,
           chloroplastic; AltName: Full=NictaRpoT3-syl; AltName:
           Full=T7 bacteriophage-type single subunit RNA polymerase
           3A; Flags: Precursor gi|21425641|emb|CAC82576.3|
           phage-type RNA polymerase [Nicotiana sylvestris]
           gi|21425679|emb|CAC95027.2| plastid RNA polymerase
           [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 977

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 10/80 (12%)
 Frame = +1

Query: 49  RRIFIQEPQWISSLFMKGLLMRKT----------EEEKRRNYEALRRRQVEVETEAWERT 198
           +R+FIQ+P W+SSLFM  L +R            E E+RR Y  LRRRQ++ ETEAWE+ 
Sbjct: 99  KRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQM 158

Query: 199 VEEYRALEREMRVKHLAPNL 258
           VEEYR LEREM  K LAPNL
Sbjct: 159 VEEYRELEREMCEKKLAPNL 178


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 44/77 (57%), Positives = 54/77 (70%), Gaps = 7/77 (9%)
 Frame = +1

Query: 49  RRIFIQEPQWISSLFMKGLLMRKTEEEK-------RRNYEALRRRQVEVETEAWERTVEE 207
           +RIFIQ+P WI+SLF+KGL     +E K       +R Y  LRRRQ++ ETEAWE+ VEE
Sbjct: 102 KRIFIQDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEE 161

Query: 208 YRALEREMRVKHLAPNL 258
           Y+ LEREM  K LAPNL
Sbjct: 162 YKELEREMCEKKLAPNL 178