BLASTX nr result

ID: Glycyrrhiza23_contig00033532 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00033532
         (252 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003617880.1| Zinc finger CCCH domain-containing protein [...   109   2e-22
ref|XP_002309215.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06

>ref|XP_003617880.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355519215|gb|AET00839.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 928

 Score =  109 bits (273), Expect = 2e-22
 Identities = 60/83 (72%), Positives = 64/83 (77%)
 Frame = +2

Query: 2   PTSAPKGIRFINVAKLSPSPSTPKQDTVTPNKGSLVQKGTCADQGASGTTQKNIVEIPKK 181
           PTSAPKGIRFINVA LSP+  TPKQDTV PNKG+LV  GTCAD+G      +N VEI KK
Sbjct: 647 PTSAPKGIRFINVANLSPT--TPKQDTVQPNKGNLVHGGTCADKG------QNTVEISKK 698

Query: 182 FPAVTPKGVNFLSFGGKGPVCCF 250
            PAV PKGVNFLSF GKG VC F
Sbjct: 699 IPAVMPKGVNFLSF-GKGSVCSF 720


>ref|XP_002309215.1| predicted protein [Populus trichocarpa] gi|222855191|gb|EEE92738.1|
           predicted protein [Populus trichocarpa]
          Length = 928

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
 Frame = +2

Query: 2   PTSAPKGIRFINVAKLSPSPSTPKQDTVTPNKGSLVQKGTCADQGASGTTQKNIVEIPKK 181
           P   PKG+ F++  K S   S+PK  + +      V+ G   DQ AS T Q +  EIP+K
Sbjct: 632 PALVPKGLSFLSGGKKSMVESSPKTSSPSLKSNVFVKVGNQIDQCASVTVQ-SCNEIPRK 690

Query: 182 FPA-VTPKGVNFLSFGGKGPV 241
            P+ V PKG+NFLSF GK P+
Sbjct: 691 IPSVVAPKGINFLSF-GKAPL 710


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