BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00033417
         (444 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28306.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5...   138   4e-31
ref|XP_003539245.1| PREDICTED: DNA-directed RNA polymerases I, I...   119   3e-25
emb|CBI35146.3| unnamed protein product [Vitis vinifera]              104   9e-21
ref|XP_002269723.2| PREDICTED: DNA-directed RNA polymerases I, I...    99   4e-19
ref|XP_002297750.1| predicted protein [Populus trichocarpa] gi|2...    97   1e-18

>gb|ABD28306.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal
           [Medicago truncatula]
          Length = 224

 Score =  138 bits (348), Expect = 4e-31
 Identities = 73/118 (61%), Positives = 90/118 (76%)
 Frame = +2

Query: 89  ERGSECIVEMEISGGGGSVDSIRYFECRRTVLEMLSDRGYAVPPSDLTTTSLPEFRSLFG 268
           E  SEC+V   I     ++++IRYFECR+T+++ML DRGY V  SDLT  SL EFRS FG
Sbjct: 9   ETRSECLVR--ICNEESNIETIRYFECRKTLMDMLHDRGYNVSESDLTL-SLSEFRSRFG 65

Query: 269 QLPKPEALGLCVSLRSNPSIKVQVVFTGTEDIKKGTITSIYNQIVDKERLSRLILIVQ 442
           + PKP  LG+ VSLRSNPSIKVQVVF GT+DI+K  +  I +QIVDKERLSRLIL++Q
Sbjct: 66  EFPKPHTLGVSVSLRSNPSIKVQVVFPGTDDIRKSNLIVIQSQIVDKERLSRLILVMQ 123


>ref|XP_003539245.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Glycine max]
          Length = 214

 Score =  119 bits (298), Expect = 3e-25
 Identities = 65/114 (57%), Positives = 77/114 (67%)
 Frame = +2

Query: 101 ECIVEMEISGGGGSVDSIRYFECRRTVLEMLSDRGYAVPPSDLTTTSLPEFRSLFGQLPK 280
           ECI +M  +   GS++S+RYF  RRT+LEML DRGY V      + SL EFRS FGQ P 
Sbjct: 2   ECIAKM--TKDNGSMESLRYFLSRRTLLEMLQDRGYDVVQHANLSPSLAEFRSRFGQNPN 59

Query: 281 PEALGLCVSLRSNPSIKVQVVFTGTEDIKKGTITSIYNQIVDKERLSRLILIVQ 442
           P+ L  CVS  SNPS  VQVVF GT+DI+KGT+  I  QI DK RL  LIL+VQ
Sbjct: 60  PQTLAFCVSHLSNPSNTVQVVFAGTDDIRKGTVNEICTQIADKGRLKGLILVVQ 113


>emb|CBI35146.3| unnamed protein product [Vitis vinifera]
          Length = 731

 Score =  104 bits (259), Expect = 9e-21
 Identities = 65/140 (46%), Positives = 88/140 (62%), Gaps = 3/140 (2%)
 Frame = +2

Query: 32  SLPP--SFRYVSKKQSTVAMGERGSECIV-EMEISGGGGSVDSIRYFECRRTVLEMLSDR 202
           SLPP  S  + S K  + A       CI  +ME     GS++S RY+  RRT+ +MLSDR
Sbjct: 497 SLPPNQSLEWESGKMESQAGSHGNGSCITADME----QGSIESYRYYLSRRTLFQMLSDR 552

Query: 203 GYAVPPSDLTTTSLPEFRSLFGQLPKPEALGLCVSLRSNPSIKVQVVFTGTEDIKKGTIT 382
           GY VP S+LT  SL +FR+ FG  P P  L +C+ L S+PS K+ VVF GT++I+K  I 
Sbjct: 553 GYNVPHSELTR-SLSDFRASFGHNPDPSRLRICLPLISSPSKKILVVFCGTDEIRKAVIR 611

Query: 383 SIYNQIVDKERLSRLILIVQ 442
            I+ QI ++E L RLIL++Q
Sbjct: 612 VIFQQI-NREGLHRLILVLQ 630


>ref|XP_002269723.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Vitis vinifera]
          Length = 221

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 53/102 (51%), Positives = 73/102 (71%)
 Frame = +2

Query: 137 GSVDSIRYFECRRTVLEMLSDRGYAVPPSDLTTTSLPEFRSLFGQLPKPEALGLCVSLRS 316
           GS++S RY+  RRT+ +MLSDRGY VP S+LT  SL +FR+ FG  P P  L +C+ L S
Sbjct: 21  GSIESYRYYLSRRTLFQMLSDRGYNVPHSELTR-SLSDFRASFGHNPDPSRLRICLPLIS 79

Query: 317 NPSIKVQVVFTGTEDIKKGTITSIYNQIVDKERLSRLILIVQ 442
           +PS K+ VVF GT++I+K  I  I+ QI ++E L RLIL++Q
Sbjct: 80  SPSKKILVVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQ 120


>ref|XP_002297750.1| predicted protein [Populus trichocarpa] gi|222845008|gb|EEE82555.1|
           predicted protein [Populus trichocarpa]
          Length = 233

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 55/102 (53%), Positives = 69/102 (67%)
 Frame = +2

Query: 137 GSVDSIRYFECRRTVLEMLSDRGYAVPPSDLTTTSLPEFRSLFGQLPKPEALGLCVSLRS 316
           GS +S RY+  RRTVLEML DRGY V  S+L   SL EFRS+FG  P  ++L   VSLRS
Sbjct: 32  GSAESYRYYISRRTVLEMLKDRGYDVLDSELNR-SLTEFRSVFGNSPDLDSLRFSVSLRS 90

Query: 317 NPSIKVQVVFTGTEDIKKGTITSIYNQIVDKERLSRLILIVQ 442
            P  K  V+F GT++IK   I ++Y QI++KE L  LILI+Q
Sbjct: 91  IPHKKTLVMFLGTDEIKTANIRTVYGQILNKESLHGLILILQ 132