BLASTX nr result
ID: Glycyrrhiza23_contig00032863
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00032863
(285 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containi... 169 3e-40
ref|XP_003592182.1| Pentatricopeptide repeat-containing protein ... 151 6e-35
ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containi... 144 1e-32
ref|XP_002513633.1| pentatricopeptide repeat-containing protein,... 128 4e-28
ref|XP_002305943.1| predicted protein [Populus trichocarpa] gi|2... 117 1e-24
>ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic-like [Glycine max]
Length = 903
Score = 169 bits (427), Expect = 3e-40
Identities = 83/94 (88%), Positives = 87/94 (92%)
Frame = +1
Query: 1 RVIIIGLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEE 180
RVI++GLE DIYVGNALVDMY KCSH TTN VKAFRGIA PNVISWTSLIAGFAEHG EE
Sbjct: 345 RVIMVGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEE 404
Query: 181 ETFQLFAEMQAAGVQPNSFTLSTILGACSKMKSL 282
E+ QLFAEMQAAGVQPNSFTLSTILGACSKMKS+
Sbjct: 405 ESVQLFAEMQAAGVQPNSFTLSTILGACSKMKSI 438
Score = 64.3 bits (155), Expect = 1e-08
Identities = 32/85 (37%), Positives = 51/85 (60%)
Frame = +1
Query: 16 GLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEEETFQL 195
G E V N+LV Y+KC + +A + F+ I P+ +SW LI+G A +GL +
Sbjct: 553 GFERCNSVSNSLVHSYSKCGSMR-DAYRVFKDITEPDRVSWNGLISGLASNGLISDALSA 611
Query: 196 FAEMQAAGVQPNSFTLSTILGACSK 270
F +M+ AGV+P+S T +++ ACS+
Sbjct: 612 FDDMRLAGVKPDSVTFLSLIFACSQ 636
Score = 62.0 bits (149), Expect = 5e-08
Identities = 32/85 (37%), Positives = 47/85 (55%)
Frame = +1
Query: 4 VIIIGLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEEE 183
V+ +GLE + +G LVD+YTKC T K + +V+SWT++I+ E E
Sbjct: 143 VVKLGLELNHVLGTTLVDLYTKCD-CTVEPHKLLAFVKDGDVVSWTTMISSLVETSKWSE 201
Query: 184 TFQLFAEMQAAGVQPNSFTLSTILG 258
QL+ +M AG+ PN FT +LG
Sbjct: 202 ALQLYVKMIEAGIYPNEFTFVKLLG 226
Score = 60.1 bits (144), Expect = 2e-07
Identities = 32/90 (35%), Positives = 51/90 (56%)
Frame = +1
Query: 4 VIIIGLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEEE 183
+I +GL+ D+Y+ N L+ +Y KC + A F + +V+SWT+L++ + E
Sbjct: 42 IIKVGLQHDLYLSNNLLCLYAKCFGVG-QARHLFDEMPHRDVVSWTTLLSAHTRNKHHFE 100
Query: 184 TFQLFAEMQAAGVQPNSFTLSTILGACSKM 273
QLF M +G PN FTLS+ L +CS +
Sbjct: 101 ALQLFDMMLGSGQCPNEFTLSSALRSCSAL 130
Score = 60.1 bits (144), Expect = 2e-07
Identities = 29/94 (30%), Positives = 55/94 (58%)
Frame = +1
Query: 1 RVIIIGLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEE 180
++I G+E ++ + A++ MY KC + +A+K + +V WTS+I+GF ++
Sbjct: 244 QLITFGVEMNLMLKTAIICMYAKCRRME-DAIKVSQQTPKYDVCLWTSIISGFVQNSQVR 302
Query: 181 ETFQLFAEMQAAGVQPNSFTLSTILGACSKMKSL 282
E +M+ +G+ PN+FT +++L A S + SL
Sbjct: 303 EAVNALVDMELSGILPNNFTYASLLNASSSVLSL 336
>ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481230|gb|AES62433.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 912
Score = 151 bits (381), Expect = 6e-35
Identities = 75/94 (79%), Positives = 84/94 (89%)
Frame = +1
Query: 1 RVIIIGLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEE 180
RVII+GLEDD+Y+GNALVDMY KCSHITTNAVK FR I SPNV+ WTSLIAGFAE L E
Sbjct: 344 RVIIVGLEDDLYIGNALVDMYMKCSHITTNAVKVFREITSPNVMCWTSLIAGFAEKRL-E 402
Query: 181 ETFQLFAEMQAAGVQPNSFTLSTILGACSKMKSL 282
++FQLFAEMQAAGV+PNSFT+S ILGACSK +SL
Sbjct: 403 DSFQLFAEMQAAGVRPNSFTMSAILGACSKTRSL 436
Score = 68.9 bits (167), Expect = 4e-10
Identities = 33/77 (42%), Positives = 51/77 (66%)
Frame = +1
Query: 37 VGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEEETFQLFAEMQAA 216
V N+LV +Y+KC I +A +AF+ I+ P+ SW LI+GF+ +GL F +M+ A
Sbjct: 558 VSNSLVHLYSKCGSIH-DANRAFKDISEPDAFSWNGLISGFSWNGLISHALSTFDDMRLA 616
Query: 217 GVQPNSFTLSTILGACS 267
GV+P+S TL +++ ACS
Sbjct: 617 GVKPDSITLLSLISACS 633
Score = 65.9 bits (159), Expect = 3e-09
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +1
Query: 13 IGLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASP-NVISWTSLIAGFAEHGLEEETF 189
+GLE + +VG +LV+ YTKC + A K + +V+SWT++++ E+G E F
Sbjct: 144 LGLEMNRFVGTSLVEFYTKCGCCSVEAWKLLSLVKDGGDVVSWTTMLSSLVENGKWGEAF 203
Query: 190 QLFAEMQAAGVQPNSFTLSTILGACSKMKSLT 285
+++ +M +GV PN FT +LGA S L+
Sbjct: 204 EIYVKMIESGVYPNEFTFVKLLGAVSSFLGLS 235
Score = 63.9 bits (154), Expect = 1e-08
Identities = 33/93 (35%), Positives = 57/93 (61%)
Frame = +1
Query: 4 VIIIGLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEEE 183
+I+ G E ++ + A+VDMY+KC + +A+K +V WT+LI+GF ++ E
Sbjct: 244 LIMFGAELNLVLKTAVVDMYSKCRRMV-DAIKVSNLTPEYDVYLWTTLISGFTQNLQVRE 302
Query: 184 TFQLFAEMQAAGVQPNSFTLSTILGACSKMKSL 282
+F +M+ +G+ PN+FT S++L A S + SL
Sbjct: 303 AISVFRDMELSGLLPNNFTYSSLLNASSSILSL 335
>ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic [Vitis vinifera]
gi|302143764|emb|CBI22625.3| unnamed protein product
[Vitis vinifera]
Length = 880
Score = 144 bits (362), Expect = 1e-32
Identities = 68/95 (71%), Positives = 83/95 (87%)
Frame = +1
Query: 1 RVIIIGLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEE 180
RV++ GLE+D+ VGN+LVDMY KCS++ +AV+AFRGIASPNVISWTSLIAGF+EHGLEE
Sbjct: 342 RVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEE 401
Query: 181 ETFQLFAEMQAAGVQPNSFTLSTILGACSKMKSLT 285
E+ ++F MQ GV+PNSFTLSTILGAC +KSLT
Sbjct: 402 ESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLT 436
Score = 65.1 bits (157), Expect = 6e-09
Identities = 32/91 (35%), Positives = 54/91 (59%)
Frame = +1
Query: 4 VIIIGLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEEE 183
+I +G ++D+++ N L+ +Y KC + A + F + +V SWT L++ + + G EE
Sbjct: 41 IIKMGFQEDMFLSNNLLSLYGKCFGVA-EARQLFDEMPCRDVASWTMLMSAYGKIGNHEE 99
Query: 184 TFQLFAEMQAAGVQPNSFTLSTILGACSKMK 276
+LF M +G PN FTLST L +CS ++
Sbjct: 100 ALELFDSMLISGEYPNEFTLSTALRSCSALR 130
Score = 64.7 bits (156), Expect = 8e-09
Identities = 36/88 (40%), Positives = 52/88 (59%)
Frame = +1
Query: 19 LEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEEETFQLF 198
+E ++ + ALVDMY KC I +AVK + +V WT++I+GF + E F
Sbjct: 247 IELNLVLKTALVDMYCKCQSIE-DAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAF 305
Query: 199 AEMQAAGVQPNSFTLSTILGACSKMKSL 282
EM+ +GV PN+FT S IL ACS + +L
Sbjct: 306 HEMETSGVVPNNFTYSGILNACSSILAL 333
Score = 62.4 bits (150), Expect = 4e-08
Identities = 34/84 (40%), Positives = 46/84 (54%)
Frame = +1
Query: 16 GLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEEETFQL 195
GL I V N LVD+Y KC I +A ++F I P+ +SW LI G A +G
Sbjct: 550 GLGSWISVSNGLVDLYGKCGCIH-DAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSA 608
Query: 196 FAEMQAAGVQPNSFTLSTILGACS 267
F +M+ AGV+P+ T +L ACS
Sbjct: 609 FEDMRLAGVEPDQITCLLVLYACS 632
Score = 61.2 bits (147), Expect = 8e-08
Identities = 29/84 (34%), Positives = 47/84 (55%)
Frame = +1
Query: 16 GLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEEETFQL 195
G + + +G+AL+D Y+KC T A + F + + +++SWT +++ F E G + QL
Sbjct: 146 GFDSNPVLGSALIDFYSKCG-CTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQL 204
Query: 196 FAEMQAAGVQPNSFTLSTILGACS 267
+ M GV PN FT +L A S
Sbjct: 205 YHRMIQTGVAPNEFTFVKLLAASS 228
>ref|XP_002513633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223547541|gb|EEF49036.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 777
Score = 128 bits (322), Expect = 4e-28
Identities = 62/93 (66%), Positives = 73/93 (78%)
Frame = +1
Query: 1 RVIIIGLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEE 180
RVI GLEDD+ VGNALVDMY KCS I + ++ FRGI SPNVISWTSLIAGFAEHG ++
Sbjct: 346 RVIRTGLEDDVPVGNALVDMYMKCSCIVEHGLRMFRGIKSPNVISWTSLIAGFAEHGFQQ 405
Query: 181 ETFQLFAEMQAAGVQPNSFTLSTILGACSKMKS 279
++ LF EM+ GVQPNSFTLS +L CS +KS
Sbjct: 406 DSLNLFMEMRTVGVQPNSFTLSIVLRVCSAIKS 438
Score = 61.2 bits (147), Expect = 8e-08
Identities = 29/87 (33%), Positives = 53/87 (60%)
Frame = +1
Query: 4 VIIIGLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEEE 183
+I +GL+D +Y+ N L+ +Y+KC + +A + F + +V+SWT +++ ++ EE
Sbjct: 45 IIKLGLQDHLYLNNNLLSLYSKCFSVE-HARQFFDEMPCRDVVSWTGILSAHIKNERHEE 103
Query: 184 TFQLFAEMQAAGVQPNSFTLSTILGAC 264
+F M +G PN+FT S+IL +C
Sbjct: 104 ALDIFDFMVLSGPYPNAFTFSSILRSC 130
Score = 60.8 bits (146), Expect = 1e-07
Identities = 31/84 (36%), Positives = 45/84 (53%)
Frame = +1
Query: 16 GLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEEETFQL 195
GL + V N L+D+Y K + A +AF I P+V+SW LI+G A +G
Sbjct: 554 GLSCCLSVANGLIDLYGKYG-LVHEARRAFTEITEPDVVSWNGLISGLASNGHISSALSA 612
Query: 196 FAEMQAAGVQPNSFTLSTILGACS 267
F +M+ G+QP+S T +L CS
Sbjct: 613 FDDMRLRGIQPDSITFLLVLSTCS 636
Score = 57.4 bits (137), Expect = 1e-06
Identities = 29/92 (31%), Positives = 57/92 (61%)
Frame = +1
Query: 7 IIIGLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEEET 186
I++G++ ++ + ALV+MY++C I +A+K + +VI WT++I+G A++ +E
Sbjct: 247 IVLGVKLNLVLKTALVNMYSRCQRIE-DAIKVSKLTPEYDVILWTAIISGLAQNMKFQEA 305
Query: 187 FQLFAEMQAAGVQPNSFTLSTILGACSKMKSL 282
F +M+ +GV ++FT ++L C + SL
Sbjct: 306 VAAFHKMEISGVSASNFTYLSMLSVCISILSL 337
>ref|XP_002305943.1| predicted protein [Populus trichocarpa] gi|222848907|gb|EEE86454.1|
predicted protein [Populus trichocarpa]
Length = 693
Score = 117 bits (292), Expect = 1e-24
Identities = 57/93 (61%), Positives = 69/93 (74%)
Frame = +1
Query: 1 RVIIIGLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEE 180
RVI+ GLEDDI VGNALVDMY KCSH + ++ F GI SP+VISWTSLIAG +EHG +
Sbjct: 267 RVIMAGLEDDIPVGNALVDMYMKCSHEVEDGLRVFEGIESPDVISWTSLIAGLSEHGFHQ 326
Query: 181 ETFQLFAEMQAAGVQPNSFTLSTILGACSKMKS 279
+F + EM A+G+QPNS TLS IL +C KS
Sbjct: 327 GSFDSYMEMTASGLQPNSVTLSIILRSCRAAKS 359
Score = 60.8 bits (146), Expect = 1e-07
Identities = 33/93 (35%), Positives = 56/93 (60%)
Frame = +1
Query: 4 VIIIGLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEEE 183
+I+ G+E ++ V ALV MY+KC + +AV+ + + WT++++G A++ E
Sbjct: 167 LIVFGVELNLVVKTALVHMYSKCQRMD-DAVRISKLTPESDRFLWTAILSGLAQNLKLRE 225
Query: 184 TFQLFAEMQAAGVQPNSFTLSTILGACSKMKSL 282
F EM+A+G+ N+FT +IL ACS + SL
Sbjct: 226 AVVAFQEMEASGILSNNFTYLSILNACSLILSL 258
Score = 60.5 bits (145), Expect = 1e-07
Identities = 31/84 (36%), Positives = 45/84 (53%)
Frame = +1
Query: 16 GLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEEETFQL 195
GL I V N LV Y KC +T +A +AF I P+++SW LI+ A +G
Sbjct: 475 GLGSSISVSNGLVSFYGKCG-LTRDAERAFAEIREPDIVSWNGLISVLASYGHISSALSA 533
Query: 196 FAEMQAAGVQPNSFTLSTILGACS 267
F +M+ GV+P+S T +L C+
Sbjct: 534 FDDMRLTGVKPDSVTFLLVLFTCT 557
Score = 55.8 bits (133), Expect = 4e-06
Identities = 28/86 (32%), Positives = 49/86 (56%)
Frame = +1
Query: 4 VIIIGLEDDIYVGNALVDMYTKCSHITTNAVKAFRGIASPNVISWTSLIAGFAEHGLEEE 183
VI G E + +G+ L+D+Y+K I A + F + + +V+SWT++I+ + G +
Sbjct: 67 VIKHGFESNQILGSVLIDLYSKYGSIE-EACRLFSCVENGDVVSWTTMISSLVQAGKWSQ 125
Query: 184 TFQLFAEMQAAGVQPNSFTLSTILGA 261
+++ +M AGV PN FT +L A
Sbjct: 126 ALRIYIDMIKAGVYPNEFTFVKVLAA 151