BLASTX nr result
ID: Glycyrrhiza23_contig00032845
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00032845
(424 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat... 224 4e-57
ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago t... 214 6e-54
ref|XP_003597243.1| Pentatricopeptide repeat-containing protein ... 210 1e-52
ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat... 197 6e-49
ref|XP_002323645.1| predicted protein [Populus trichocarpa] gi|2... 188 3e-46
>ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 224 bits (572), Expect = 4e-57
Identities = 112/141 (79%), Positives = 121/141 (85%)
Frame = +2
Query: 2 TLHSQVVKTGFDDDVFVKTNLVSLYSKCGYLWGARKVFDDIPDKNVVSWTAIICGYIECG 181
+LHS V+KTGFD DVFVKT LV LYSK G+L ARKVFD+IP+KNVVSWTAIICGYIE G
Sbjct: 123 SLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESG 182
Query: 182 QCEEAVGLFRGLLEMGLRPDGFTLVRVLRACGKLGDLGSGRWIDGYMRECGLHRNVFVAT 361
EA+GLFRGLLEMGLRPD FTLVR+L AC ++GDL SGRWIDGYMRE G NVFVAT
Sbjct: 183 CFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVAT 242
Query: 362 SLVDMYAKCGSMEEARGVFDG 424
SLVDMYAKCGSMEEAR VFDG
Sbjct: 243 SLVDMYAKCGSMEEARRVFDG 263
Score = 110 bits (275), Expect = 1e-22
Identities = 56/134 (41%), Positives = 83/134 (61%)
Frame = +2
Query: 23 KTGFDDDVFVKTNLVSLYSKCGYLWGARKVFDDIPDKNVVSWTAIICGYIECGQCEEAVG 202
++G +VFV T+LV +Y+KCG + AR+VFD + +K+VV W+A+I GY G +EA+
Sbjct: 231 ESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALD 290
Query: 203 LFRGLLEMGLRPDGFTLVRVLRACGKLGDLGSGRWIDGYMRECGLHRNVFVATSLVDMYA 382
+F + +RPD + +V V AC +LG L G W G M N + T+L+D YA
Sbjct: 291 VFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYA 350
Query: 383 KCGSMEEARGVFDG 424
KCGS+ +A+ VF G
Sbjct: 351 KCGSVAQAKEVFKG 364
Score = 64.3 bits (155), Expect = 1e-08
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Frame = +2
Query: 56 TNLVSLYSKCGYLWGARKVFDDIPDKNVVSWTAIICGYIECGQCEEAVGLFRGLLEMGLR 235
T L+ Y+KCG + A++VF + K+ V + A+I G CG A G+F ++++G++
Sbjct: 343 TALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQ 402
Query: 236 PDGFTLVRVLRACGKLGDLGSG-RWIDGYMRECGLHRNVFVATSLVDMYAKCGSMEEAR 409
PDG T V +L C G + G R+ G + + +VD+ A+ G + EA+
Sbjct: 403 PDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQ 461
Score = 58.9 bits (141), Expect = 4e-07
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Frame = +2
Query: 8 HSQVVKTGFDDDVFVKTNLVSLYSKCGYLWGARKVFDDIPDKNVVSWTAIICGYIECGQC 187
H +++ G D ++ L+ A VF P N+ + +I G +
Sbjct: 23 HCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAF 82
Query: 188 EEAVGLFRGLLEMGLRPDGFTLVRVLRACGKLGD-LGSGRWIDGYMRECGLHRNVFVATS 364
+AV ++ + + G PD FT VL+AC +L G + + + G +VFV T
Sbjct: 83 RDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTG 142
Query: 365 LVDMYAKCGSMEEARGVFD 421
LV +Y+K G + +AR VFD
Sbjct: 143 LVCLYSKNGFLTDARKVFD 161
>ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat
protein [Medicago truncatula]
Length = 678
Score = 214 bits (545), Expect = 6e-54
Identities = 107/140 (76%), Positives = 115/140 (82%)
Frame = +2
Query: 5 LHSQVVKTGFDDDVFVKTNLVSLYSKCGYLWGARKVFDDIPDKNVVSWTAIICGYIECGQ 184
+HS V KTGFD DVFVKTN+V YSKCG+L A KVFDD+ KNVVSWT +ICG IE G+
Sbjct: 126 IHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGK 185
Query: 185 CEEAVGLFRGLLEMGLRPDGFTLVRVLRACGKLGDLGSGRWIDGYMRECGLHRNVFVATS 364
EAV LFRGLLE GLRPDGF +VRVLRAC +LGDL SGRWID MRECGL RNVFVATS
Sbjct: 186 FREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATS 245
Query: 365 LVDMYAKCGSMEEARGVFDG 424
LVDMY KCGSMEEAR VFDG
Sbjct: 246 LVDMYTKCGSMEEARFVFDG 265
Score = 114 bits (284), Expect = 1e-23
Identities = 58/130 (44%), Positives = 80/130 (61%)
Frame = +2
Query: 29 GFDDDVFVKTNLVSLYSKCGYLWGARKVFDDIPDKNVVSWTAIICGYIECGQCEEAVGLF 208
G +VFV T+LV +Y+KCG + AR VFD + +K++V W+A+I GY G EA+ LF
Sbjct: 235 GLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELF 294
Query: 209 RGLLEMGLRPDGFTLVRVLRACGKLGDLGSGRWIDGYMRECGLHRNVFVATSLVDMYAKC 388
+ ++ +RPD + +V L +C LG L G W G M N + TSL+D YAKC
Sbjct: 295 FEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKC 354
Query: 389 GSMEEARGVF 418
GSMEEA GV+
Sbjct: 355 GSMEEALGVY 364
Score = 56.2 bits (134), Expect = 3e-06
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Frame = +2
Query: 110 VFDDIP-DKNVVSWTAIICGYIECGQCEEAVGLFRGLLEMGLRPDGFTLVRVLRACGKLG 286
VF P + N + +I G + + AV L+ + + + PD FT VL+AC +L
Sbjct: 59 VFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLN 118
Query: 287 DLGSGRWIDGYMRECGLHRNVFVATSLVDMYAKCGSMEEARGVFD 421
G I + + G +VFV T++V Y+KCG + +A VFD
Sbjct: 119 LFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFD 163
Score = 55.8 bits (133), Expect = 3e-06
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Frame = +2
Query: 56 TNLVSLYSKCGYLWGARKVFDDIPDKNVVSWTAIICGYIECGQCEEAVGLFRGLLEMGLR 235
T+L+ Y+KCG + A V+ + +K+ V + A+I G GQ A G+F + + G+
Sbjct: 345 TSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIP 404
Query: 236 PDGFTLVRVLRACGKLGDLGSGR-WIDGYMRECGLHRNVFVATSLVDMYAKCGSMEEARG 412
P+ T V +L C G + GR + + + + + +VD+ A+ G ++EA
Sbjct: 405 PNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHN 464
Query: 413 VFDG 424
+ G
Sbjct: 465 LIKG 468
>ref|XP_003597243.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486291|gb|AES67494.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 509
Score = 210 bits (534), Expect = 1e-52
Identities = 103/140 (73%), Positives = 115/140 (82%)
Frame = +2
Query: 5 LHSQVVKTGFDDDVFVKTNLVSLYSKCGYLWGARKVFDDIPDKNVVSWTAIICGYIECGQ 184
+HS V KTGFD DVFVKTN+V YSKCG+L A K+FDD+ KN+VSWT +ICG IE G+
Sbjct: 52 MHSLVFKTGFDCDVFVKTNVVCFYSKCGFLKDAWKMFDDMVVKNIVSWTGMICGCIEFGK 111
Query: 185 CEEAVGLFRGLLEMGLRPDGFTLVRVLRACGKLGDLGSGRWIDGYMRECGLHRNVFVATS 364
EAV LFRGLLE GLRPDGF +VRVLRAC +LGDL SGRWID +R+CGL RNVFVATS
Sbjct: 112 FREAVYLFRGLLESGLRPDGFVIVRVLRACARLGDLDSGRWIDRCLRDCGLSRNVFVATS 171
Query: 365 LVDMYAKCGSMEEARGVFDG 424
LVDMY KCGSMEEAR VFDG
Sbjct: 172 LVDMYTKCGSMEEARFVFDG 191
Score = 82.0 bits (201), Expect = 5e-14
Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Frame = +2
Query: 29 GFDDDVFVKTNLVSLYSKCGYLWGARKVFDDIPDKNVVSWTAIICGYIECGQCEEAVGLF 208
G +VFV T+LV +Y+KCG + AR VFD + +K+VV W+AI LF
Sbjct: 161 GLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDVVCWSAI--------------ELF 206
Query: 209 RGLLEMGLRPDGFTLVRVLRAC---GKLGDLGSGRWIDGYMRECGLHRNVFVATSLVDMY 379
+ ++ +RPD + ++ L +C LG L G W G M + + T L+D Y
Sbjct: 207 FEMRKVNVRPDCYAMMGALSSCVIDFCLGALELGNWTKGLMNYEEFLSDPVLGTYLIDFY 266
Query: 380 AKCGSMEEARGVF 418
KCGSMEEA GV+
Sbjct: 267 EKCGSMEEALGVY 279
>ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 197 bits (502), Expect = 6e-49
Identities = 98/140 (70%), Positives = 111/140 (79%)
Frame = +2
Query: 5 LHSQVVKTGFDDDVFVKTNLVSLYSKCGYLWGARKVFDDIPDKNVVSWTAIICGYIECGQ 184
+H+ VVK GFD DVFVKT+LV LY+KCGYL A KVFDDIPDKNVVSWTAII GYI G+
Sbjct: 134 IHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGK 193
Query: 185 CEEAVGLFRGLLEMGLRPDGFTLVRVLRACGKLGDLGSGRWIDGYMRECGLHRNVFVATS 364
EA+ +FR LLEM L PD FT+VRVL AC +LGDL SG WI + E G+ RNVFV TS
Sbjct: 194 FREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTS 253
Query: 365 LVDMYAKCGSMEEARGVFDG 424
LVDMYAKCG+ME+AR VFDG
Sbjct: 254 LVDMYAKCGNMEKARSVFDG 273
Score = 120 bits (300), Expect = 2e-25
Identities = 60/140 (42%), Positives = 88/140 (62%)
Frame = +2
Query: 5 LHSQVVKTGFDDDVFVKTNLVSLYSKCGYLWGARKVFDDIPDKNVVSWTAIICGYIECGQ 184
+H +++ G +VFV T+LV +Y+KCG + AR VFD +P+K++VSW A+I GY G
Sbjct: 235 IHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGL 294
Query: 185 CEEAVGLFRGLLEMGLRPDGFTLVRVLRACGKLGDLGSGRWIDGYMRECGLHRNVFVATS 364
+EA+ LF + ++PD +T+V VL AC +LG L G W+ G + N + T+
Sbjct: 295 PKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTA 354
Query: 365 LVDMYAKCGSMEEARGVFDG 424
L+D+YAKCGSM A VF G
Sbjct: 355 LIDLYAKCGSMSRAWEVFKG 374
Score = 71.6 bits (174), Expect = 6e-11
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 4/143 (2%)
Frame = +2
Query: 5 LHSQVVKTGFDDDVFVKTNLVSLYSKCGYLWG----ARKVFDDIPDKNVVSWTAIICGYI 172
LH+ +++ G D + L+++ +C + + R +F I N+ W +I G +
Sbjct: 33 LHAHLLRFGLCHDNY----LLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLV 88
Query: 173 ECGQCEEAVGLFRGLLEMGLRPDGFTLVRVLRACGKLGDLGSGRWIDGYMRECGLHRNVF 352
++A+ + + G P+ FT VL+AC +L DL G I + + G +VF
Sbjct: 89 SNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVF 148
Query: 353 VATSLVDMYAKCGSMEEARGVFD 421
V TSLV +YAKCG +E+A VFD
Sbjct: 149 VKTSLVCLYAKCGYLEDAHKVFD 171
Score = 64.7 bits (156), Expect = 8e-09
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Frame = +2
Query: 56 TNLVSLYSKCGYLWGARKVFDDIPDKNVVSWTAIICGYIECGQCEEAVGLFRGLLEMGLR 235
T L+ LY+KCG + A +VF + +K+ V W AII G G + + GLF + ++G++
Sbjct: 353 TALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIK 412
Query: 236 PDGFTLVRVLRACGKLGDLGSG-RWIDGYMRECGLHRNVFVATSLVDMYAKCGSMEEA 406
PDG T + +L C G + G R+ + R L ++ +VD+ + G ++EA
Sbjct: 413 PDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEA 470
>ref|XP_002323645.1| predicted protein [Populus trichocarpa] gi|222868275|gb|EEF05406.1|
predicted protein [Populus trichocarpa]
Length = 682
Score = 188 bits (478), Expect = 3e-46
Identities = 89/140 (63%), Positives = 107/140 (76%)
Frame = +2
Query: 5 LHSQVVKTGFDDDVFVKTNLVSLYSKCGYLWGARKVFDDIPDKNVVSWTAIICGYIECGQ 184
+HS VVK G + D FVK +L++LY+KCG++ A KVFDDIPDKN SWTA I GY+ G+
Sbjct: 130 MHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGK 189
Query: 185 CEEAVGLFRGLLEMGLRPDGFTLVRVLRACGKLGDLGSGRWIDGYMRECGLHRNVFVATS 364
C EA+ +FR LLEMGLRPD F+LV VL AC + GDL SG WID Y+ E G+ RNVFVAT+
Sbjct: 190 CREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATA 249
Query: 365 LVDMYAKCGSMEEARGVFDG 424
LVD Y KCG+ME AR VFDG
Sbjct: 250 LVDFYGKCGNMERARSVFDG 269
Score = 110 bits (276), Expect = 9e-23
Identities = 58/136 (42%), Positives = 81/136 (59%)
Frame = +2
Query: 17 VVKTGFDDDVFVKTNLVSLYSKCGYLWGARKVFDDIPDKNVVSWTAIICGYIECGQCEEA 196
+ + G +VFV T LV Y KCG + AR VFD + +KN+VSW+++I GY G +EA
Sbjct: 235 ITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEA 294
Query: 197 VGLFRGLLEMGLRPDGFTLVRVLRACGKLGDLGSGRWIDGYMRECGLHRNVFVATSLVDM 376
+ LF +L GL+PD + +V VL +C +LG L G W + N + T+L+DM
Sbjct: 295 LDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDM 354
Query: 377 YAKCGSMEEARGVFDG 424
YAKCG M+ A VF G
Sbjct: 355 YAKCGRMDRAWEVFRG 370
Score = 70.1 bits (170), Expect = 2e-10
Identities = 35/139 (25%), Positives = 72/139 (51%)
Frame = +2
Query: 5 LHSQVVKTGFDDDVFVKTNLVSLYSKCGYLWGARKVFDDIPDKNVVSWTAIICGYIECGQ 184
+H+ +++ G D+D ++ ++ G + ++ D + N+ + +I G +
Sbjct: 29 IHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDC 88
Query: 185 CEEAVGLFRGLLEMGLRPDGFTLVRVLRACGKLGDLGSGRWIDGYMRECGLHRNVFVATS 364
+E++ ++ + + GL PD FT VL+AC ++ D G + + + G + FV S
Sbjct: 89 FQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKIS 148
Query: 365 LVDMYAKCGSMEEARGVFD 421
L+++Y KCG ++ A VFD
Sbjct: 149 LINLYTKCGFIDNAFKVFD 167
Score = 62.8 bits (151), Expect = 3e-08
Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Frame = +2
Query: 32 FDDDVFVKTNLVSLYSKCGYLWGARKVFDDIPDKNVVSWTAIICGYIECGQCEEAVGLFR 211
F D+ + T L+ +Y+KCG + A +VF + K+ V W A I G G ++A+GLF
Sbjct: 341 FLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFG 400
Query: 212 GLLEMGLRPDGFTLVRVLRACGKLGDLGSGRWIDGYMRECGLHRNVFVAT-------SLV 370
+ + G++PD T V +L AC G + GR M EC VF T +V
Sbjct: 401 QMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSM-EC-----VFTLTPEIEHYGCMV 454
Query: 371 DMYAKCGSMEEA 406
D+ + G ++EA
Sbjct: 455 DLLGRAGCLDEA 466