BLASTX nr result

ID: Glycyrrhiza23_contig00032456 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00032456
         (291 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD32333.1| polyprotein-like, putative [Medicago truncatula]        91   1e-18
ref|XP_003557045.1| PREDICTED: uncharacterized protein LOC100783...    87   4e-18
ref|XP_003551446.1| PREDICTED: uncharacterized protein LOC100819...    87   4e-18
gb|ABD32757.1| Integrase, catalytic region [Medicago truncatula]       77   1e-15
emb|CAN83990.1| hypothetical protein VITISV_018454 [Vitis vinifera]    82   3e-15

>gb|ABD32333.1| polyprotein-like, putative [Medicago truncatula]
          Length = 635

 Score = 90.5 bits (223), Expect(2) = 1e-18
 Identities = 40/67 (59%), Positives = 49/67 (73%)
 Frame = -2

Query: 203 TTCPDITHVVQPLSQFLASPTAVHFKYDQRVLRYLKGNPGKGIFFPRSSPLQLLGFTHVD 24
           TT PDIT + Q LSQFL+ PT  H+    RVL+YLKG+PGKGIFFPR+S L + G+T  D
Sbjct: 399 TTRPDITFITQQLSQFLSKPTQTHYHATLRVLKYLKGSPGKGIFFPRASGLHIQGYTDAD 458

Query: 23  WTGCPDS 3
           W GC D+
Sbjct: 459 WVGCKDT 465



 Score = 27.3 bits (59), Expect(2) = 1e-18
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 289 IHLHQN-SPPHPDVVGYRHLIGRLLY 215
           I LH + S   PD+  YR LIGRL+Y
Sbjct: 371 IKLHNDTSLLFPDISAYRRLIGRLIY 396


>ref|XP_003557045.1| PREDICTED: uncharacterized protein LOC100783177 [Glycine max]
          Length = 2219

 Score = 87.4 bits (215), Expect(2) = 4e-18
 Identities = 40/67 (59%), Positives = 48/67 (71%)
 Frame = -2

Query: 203  TTCPDITHVVQPLSQFLASPTAVHFKYDQRVLRYLKGNPGKGIFFPRSSPLQLLGFTHVD 24
            TT PDI    Q LSQF+ +PT VHF    RVLRYLK NPG+GIFF R+S +QL+G++  D
Sbjct: 1203 TTRPDIAFATQQLSQFMQAPTNVHFNAACRVLRYLKNNPGQGIFFSRTSEMQLIGYSDAD 1262

Query: 23   WTGCPDS 3
            W GC DS
Sbjct: 1263 WAGCMDS 1269



 Score = 28.5 bits (62), Expect(2) = 4e-18
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 289  IHLHQNS-PPHPDVVGYRHLIGRLLY 215
            I LH  +  P+ D+ GYR ++G+LLY
Sbjct: 1175 IKLHSAAGTPYADISGYRRIVGKLLY 1200


>ref|XP_003551446.1| PREDICTED: uncharacterized protein LOC100819074 [Glycine max]
          Length = 1750

 Score = 87.4 bits (215), Expect(2) = 4e-18
 Identities = 40/67 (59%), Positives = 48/67 (71%)
 Frame = -2

Query: 203  TTCPDITHVVQPLSQFLASPTAVHFKYDQRVLRYLKGNPGKGIFFPRSSPLQLLGFTHVD 24
            TT PDI    Q LSQF+ +PT VHF    RVLRYLK NPG+GIFF R+S +QL+G++  D
Sbjct: 1039 TTRPDIAFATQQLSQFMQAPTNVHFNAACRVLRYLKNNPGQGIFFSRTSEMQLIGYSDAD 1098

Query: 23   WTGCPDS 3
            W GC DS
Sbjct: 1099 WAGCMDS 1105



 Score = 28.5 bits (62), Expect(2) = 4e-18
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 289  IHLHQNS-PPHPDVVGYRHLIGRLLY 215
            I LH  +  P+ D+ GYR ++G+LLY
Sbjct: 1011 IKLHSAAGTPYADISGYRRIVGKLLY 1036


>gb|ABD32757.1| Integrase, catalytic region [Medicago truncatula]
          Length = 1157

 Score = 77.0 bits (188), Expect(2) = 1e-15
 Identities = 36/59 (61%), Positives = 42/59 (71%)
 Frame = -2

Query: 203  TTCPDITHVVQPLSQFLASPTAVHFKYDQRVLRYLKGNPGKGIFFPRSSPLQLLGFTHV 27
            TT PDIT + Q LSQFL  PT +H+    RVLRYLK  PGKG+ FPR S +QLLGF+ V
Sbjct: 1095 TTRPDITFITQQLSQFLTKPTQIHYTAAMRVLRYLKSYPGKGLLFPRDSTIQLLGFSDV 1153



 Score = 30.8 bits (68), Expect(2) = 1e-15
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 289  IHLHQNSPP-HPDVVGYRHLIGRLLY 215
            I LH +S P + D+  YR LIGRLLY
Sbjct: 1067 IKLHNDSSPLYEDISSYRRLIGRLLY 1092


>emb|CAN83990.1| hypothetical protein VITISV_018454 [Vitis vinifera]
          Length = 1243

 Score = 81.6 bits (200), Expect(2) = 3e-15
 Identities = 37/66 (56%), Positives = 46/66 (69%)
 Frame = -2

Query: 200  TCPDITHVVQPLSQFLASPTAVHFKYDQRVLRYLKGNPGKGIFFPRSSPLQLLGFTHVDW 21
            T PDI++VV  LSQF++ P   H    QR+LRYLKGNPG G+FFP +S L L+ +T  DW
Sbjct: 1054 TRPDISYVVGRLSQFISRPKLPHLHAAQRILRYLKGNPGMGLFFPSNSELXLMAYTDSDW 1113

Query: 20   TGCPDS 3
              CPDS
Sbjct: 1114 ARCPDS 1119



 Score = 24.6 bits (52), Expect(2) = 3e-15
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 259  PDVVGYRHLIGRLLY 215
            PDV  YR L+G+LLY
Sbjct: 1036 PDVSLYRRLLGKLLY 1050


Top