BLASTX nr result

ID: Glycyrrhiza23_contig00032439 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00032439
         (328 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat...   162   2e-38
ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat...   136   2e-30
ref|XP_002524089.1| pentatricopeptide repeat-containing protein,...   135   3e-30
ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|2...   135   3e-30
ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|2...   135   3e-30

>ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g06400, mitochondrial-like [Glycine max]
          Length = 1034

 Score =  162 bits (411), Expect = 2e-38
 Identities = 82/108 (75%), Positives = 95/108 (87%)
 Frame = +1

Query: 1   RLSLMPENSIHGCMLKSFCGSGRIKEALELIRDLKNKDVVLEPEFFEILVRGLCKAGRMT 180
           RLS+MPE  +HGCMLKSFC SG I+EALELIR+LK+KD+ LEPE +E LVRGLCKAGR+T
Sbjct: 323 RLSVMPEKCVHGCMLKSFCISGSIEEALELIRELKSKDLDLEPENYETLVRGLCKAGRIT 382

Query: 181 DALEIVEIMKKRDIVDWKKVHGIIINGYLGRNDIHSALGVFQSMKESG 324
           DALEIV+IMK+RD+VD  +VHGIIINGYLGRND+  AL VFQ MKESG
Sbjct: 383 DALEIVDIMKRRDMVD-GRVHGIIINGYLGRNDVDRALEVFQCMKESG 429


>ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g06400, mitochondrial-like [Vitis vinifera]
          Length = 1048

 Score =  136 bits (343), Expect = 2e-30
 Identities = 70/109 (64%), Positives = 85/109 (77%)
 Frame = +1

Query: 1   RLSLMPENSIHGCMLKSFCGSGRIKEALELIRDLKNKDVVLEPEFFEILVRGLCKAGRMT 180
           R S +PE  +  CMLKSFC +GRI+EALELIRDL +K++ LEP  FE LV+GLC+A R+T
Sbjct: 338 RRSQIPERDVFSCMLKSFCIAGRIREALELIRDLNDKNLTLEPNDFETLVKGLCRADRIT 397

Query: 181 DALEIVEIMKKRDIVDWKKVHGIIINGYLGRNDIHSALGVFQSMKESGY 327
           DA EIV+IMKKR +VD  KV+GIII+GYL RNDI  A  V Q+M ESGY
Sbjct: 398 DAAEIVDIMKKRKVVD-AKVYGIIISGYLRRNDIPKAFDVLQTMTESGY 445



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 32/94 (34%), Positives = 53/94 (56%)
 Frame = +1

Query: 43   LKSFCGSGRIKEALELIRDLKNKDVVLEPEFFEILVRGLCKAGRMTDALEIVEIMKKRDI 222
            +++ C +GR++EAL L+ ++  + V L+   +  LV GL + GR+ +ALE V+ MK+  I
Sbjct: 845  IRALCRAGRLEEALALVDEVGPERVTLDQYIYGSLVHGLLRRGRLKEALEKVDSMKQIGI 904

Query: 223  VDWKKVHGIIINGYLGRNDIHSALGVFQSMKESG 324
                 V+  +I  +     +  AL  FQ MKE G
Sbjct: 905  HPTVHVYTSLIVHFFKEKQMRKALETFQKMKEEG 938


>ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536657|gb|EEF38299.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1072

 Score =  135 bits (340), Expect = 3e-30
 Identities = 64/108 (59%), Positives = 90/108 (83%)
 Frame = +1

Query: 1   RLSLMPENSIHGCMLKSFCGSGRIKEALELIRDLKNKDVVLEPEFFEILVRGLCKAGRMT 180
           RLS +PE+ ++ C+LKSFC +G+I+EALELIRDLKNKD++++ E+   LV+GLC+  R+T
Sbjct: 343 RLSQIPEHDVNVCILKSFCVAGKIREALELIRDLKNKDILIDYEYLGTLVKGLCRGDRIT 402

Query: 181 DALEIVEIMKKRDIVDWKKVHGIIINGYLGRNDIHSALGVFQSMKESG 324
           DA+EIVEIMKKR+++D  K++GIIINGYL + D+  A+ +FQ MKESG
Sbjct: 403 DAVEIVEIMKKRNLID-AKIYGIIINGYLRKKDLSKAIELFQRMKESG 449


>ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|222854309|gb|EEE91856.1|
           predicted protein [Populus trichocarpa]
          Length = 1048

 Score =  135 bits (340), Expect = 3e-30
 Identities = 68/109 (62%), Positives = 89/109 (81%)
 Frame = +1

Query: 1   RLSLMPENSIHGCMLKSFCGSGRIKEALELIRDLKNKDVVLEPEFFEILVRGLCKAGRMT 180
           R+S +PE+ +H C+LKS+C +GRI+EALELIRDLKNK++ L+ E  E LV+GL +A R+ 
Sbjct: 337 RVSQIPEHDVHVCVLKSYCVAGRIREALELIRDLKNKEIQLDYEVSETLVKGLSRANRIA 396

Query: 181 DALEIVEIMKKRDIVDWKKVHGIIINGYLGRNDIHSALGVFQSMKESGY 327
           DALEIVEIMK++D VD  KV+GIIINGYL RN++  AL +FQSMKE G+
Sbjct: 397 DALEIVEIMKRKDFVD-GKVYGIIINGYLRRNELSKALDLFQSMKEFGH 444


>ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|222836989|gb|EEE75382.1|
           predicted protein [Populus trichocarpa]
          Length = 1048

 Score =  135 bits (340), Expect = 3e-30
 Identities = 68/109 (62%), Positives = 89/109 (81%)
 Frame = +1

Query: 1   RLSLMPENSIHGCMLKSFCGSGRIKEALELIRDLKNKDVVLEPEFFEILVRGLCKAGRMT 180
           R+S +PE+ +H C+LKS+C +GRI+EALELIRDLKNK++ L+ E  E LV+GL +A R+ 
Sbjct: 337 RVSQIPEHDVHVCVLKSYCVAGRIREALELIRDLKNKEIQLDYEVSETLVKGLSRANRIA 396

Query: 181 DALEIVEIMKKRDIVDWKKVHGIIINGYLGRNDIHSALGVFQSMKESGY 327
           DALEIVEIMK++D VD  KV+GIIINGYL RN++  AL +FQSMKE G+
Sbjct: 397 DALEIVEIMKRKDFVD-GKVYGIIINGYLRRNELSKALDLFQSMKEFGH 444


Top