BLASTX nr result

ID: Glycyrrhiza23_contig00032358 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00032358
         (371 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001237783.1| mitotic cyclin a2-type [Glycine max] gi|8573...   146   2e-33
ref|XP_003526434.1| PREDICTED: cyclin-A2-2-like [Glycine max]         139   2e-31
ref|XP_003603466.1| Cyclin [Medicago truncatula] gi|355492514|gb...   118   6e-25
ref|XP_002309589.1| predicted protein [Populus trichocarpa] gi|2...    75   4e-12
ref|XP_002324834.1| predicted protein [Populus trichocarpa] gi|2...    74   1e-11

>ref|NP_001237783.1| mitotic cyclin a2-type [Glycine max] gi|857395|dbj|BAA09465.1|
           mitotic cyclin a2-type [Glycine max]
          Length = 469

 Score =  146 bits (369), Expect = 2e-33
 Identities = 78/118 (66%), Positives = 94/118 (79%), Gaps = 2/118 (1%)
 Frame = +3

Query: 24  MNRANTFCAKDEERPLRITRARARNLRGIPPCSRPSFKNERKNVLRASSKRAASE-NKTC 200
           M++ N  CAKDEERPLRITRARAR LRGI P SRPS KNE+KNVLRA+SKRAAS  NKT 
Sbjct: 1   MDKVNRVCAKDEERPLRITRARARALRGITPYSRPSLKNEQKNVLRANSKRAASSGNKTF 60

Query: 201 MIMPDMVQHKRKAVLTDVTNIGTKPRDKRVKASQFQTRGVCKKKNTRL-ASDVSIEVS 371
            ++P +VQ K +AVL+D++N+  KP DK  KAS+FQ +GVC KKNT+L AS VS +VS
Sbjct: 61  AVVPAVVQQKGRAVLSDISNMCAKPHDKCTKASKFQAKGVCTKKNTKLAASSVSTDVS 118


>ref|XP_003526434.1| PREDICTED: cyclin-A2-2-like [Glycine max]
          Length = 469

 Score =  139 bits (350), Expect = 2e-31
 Identities = 76/118 (64%), Positives = 92/118 (77%), Gaps = 2/118 (1%)
 Frame = +3

Query: 24  MNRANTFCAKDEERPLRITRARARNLRGIPPCSRPSFKNERKNVLRASSKRAA-SENKTC 200
           M++ N  CAKDEERPLRITRARAR LRGI P SRPS KNE+KNVLRA  KRAA SENKT 
Sbjct: 1   MDKVNRVCAKDEERPLRITRARARALRGITPYSRPSLKNEQKNVLRAHPKRAASSENKTS 60

Query: 201 MIMPDMVQHKRKAVLTDVTNIGTKPRDKRVKASQFQTRGVCKKKNTRLAS-DVSIEVS 371
           +++P +VQ K +AVL+DV+N+  KP DK  K+S+FQ +GV  KK T+LA+  VS EVS
Sbjct: 61  VVVPAVVQQKGRAVLSDVSNMCAKPHDKCTKSSKFQAKGVYTKKTTKLAALGVSTEVS 118


>ref|XP_003603466.1| Cyclin [Medicago truncatula] gi|355492514|gb|AES73717.1| Cyclin
           [Medicago truncatula]
          Length = 478

 Score =  118 bits (295), Expect = 6e-25
 Identities = 69/117 (58%), Positives = 82/117 (70%), Gaps = 1/117 (0%)
 Frame = +3

Query: 24  MNRAN-TFCAKDEERPLRITRARARNLRGIPPCSRPSFKNERKNVLRASSKRAASENKTC 200
           M++AN T CAKDEERPLRITR+RA+ L G      PS +NE K     S    +SENKTC
Sbjct: 1   MSKANSTLCAKDEERPLRITRSRAKVLGG------PSLENEGKRAT-TSKMVVSSENKTC 53

Query: 201 MIMPDMVQHKRKAVLTDVTNIGTKPRDKRVKASQFQTRGVCKKKNTRLASDVSIEVS 371
           +++P     KR+A LTDVTNI  KP DKRVK S FQ +GV +KKNT+L SDVSIEVS
Sbjct: 54  VVVP---HRKRRAGLTDVTNITAKPHDKRVKQSNFQAKGVYQKKNTKLTSDVSIEVS 107


>ref|XP_002309589.1| predicted protein [Populus trichocarpa] gi|222855565|gb|EEE93112.1|
           predicted protein [Populus trichocarpa]
          Length = 495

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 9/129 (6%)
 Frame = +3

Query: 12  KAHTMNRANTFCAKDEERPLRITRARARNLR---GIPPCSRPSFKNERKNVLRASSKRAA 182
           K   MN+ N   AK EE   RITRARA+ L    GI P S+PSFK E+++ LRA +KRAA
Sbjct: 11  KQAKMNKENATTAKLEEPATRITRARAKALGASVGIYPASKPSFKQEQRHPLRAKTKRAA 70

Query: 183 S-ENKTCMIMPDMVQHKRKAVLTDVTNIGTKPRDKR-VKASQFQTRGVCK----KKNTRL 344
           S ENK+        +HKR+AVL DV+NI  +   +  + A++  T  + +    K N  +
Sbjct: 71  SDENKSASTSIAGFKHKRRAVLKDVSNIFCENSHQNCIHATKQYTSKLARKCPPKTNAEV 130

Query: 345 ASDVSIEVS 371
           A+ +S+++S
Sbjct: 131 AARISMKIS 139


>ref|XP_002324834.1| predicted protein [Populus trichocarpa] gi|222866268|gb|EEF03399.1|
           predicted protein [Populus trichocarpa]
          Length = 433

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
 Frame = +3

Query: 24  MNRANTFCAKDEERPLRITRARAR---NLRGIPPCSRPSFKNERKNVLRASSKRAAS-EN 191
           MN+ N   AK EE   RITRARA+      G+ P S+PSFK ++K+ LR  +KRAAS EN
Sbjct: 11  MNKENATAAKHEEPTTRITRARAKASGTSVGLFPASKPSFKQDQKHPLREKTKRAASDEN 70

Query: 192 KTCMIMPDMVQHKRKAVLTDVTN 260
           K+C      ++HKR+AVL DVTN
Sbjct: 71  KSCSTSVAGLKHKRRAVLKDVTN 93


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