BLASTX nr result

ID: Glycyrrhiza23_contig00032296 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00032296
         (294 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003603255.1| Glutamate receptor 2.8 [Medicago truncatula]...   181   7e-44
ref|XP_003603256.1| Glutamate receptor 2.8 [Medicago truncatula]...   172   3e-41
ref|XP_002339225.1| glutamate-gated kainate-type ion channel rec...   133   1e-29
ref|XP_002324363.1| glutamate-gated kainate-type ion channel rec...   132   3e-29
ref|XP_002324368.1| glutamate-gated kainate-type ion channel rec...   130   1e-28

>ref|XP_003603255.1| Glutamate receptor 2.8 [Medicago truncatula]
            gi|355492303|gb|AES73506.1| Glutamate receptor 2.8
            [Medicago truncatula]
          Length = 1057

 Score =  181 bits (458), Expect = 7e-44
 Identities = 83/98 (84%), Positives = 93/98 (94%)
 Frame = +1

Query: 1    VPYVRHFLGTYSCSKYVMIEPRFKTGGFGYAFPKGSPLVADISRAILSVTQGDKMRAIEK 180
            VPY++HFLGTYSCSKYVM+EPRFKTGGFGYAFPKGSPLVADISRAIL+VTQGD+M+ IE 
Sbjct: 839  VPYIKHFLGTYSCSKYVMVEPRFKTGGFGYAFPKGSPLVADISRAILNVTQGDRMKTIEN 898

Query: 181  EWFNETSCLESNTEVSSNSSLGLESFWGLFLIAGIASL 294
             W  +TSCL+SNTE+SSN+SLGLESFWGLFLIAGIASL
Sbjct: 899  AWLKKTSCLDSNTEISSNNSLGLESFWGLFLIAGIASL 936


>ref|XP_003603256.1| Glutamate receptor 2.8 [Medicago truncatula]
            gi|355492304|gb|AES73507.1| Glutamate receptor 2.8
            [Medicago truncatula]
          Length = 990

 Score =  172 bits (436), Expect = 3e-41
 Identities = 83/100 (83%), Positives = 90/100 (90%), Gaps = 2/100 (2%)
 Frame = +1

Query: 1    VPYVRHFLGTYSCS--KYVMIEPRFKTGGFGYAFPKGSPLVADISRAILSVTQGDKMRAI 174
            VPYV+HFLG YSCS  KY M+EPRFKTGGFGYAFPKGSPLVADISRAIL+VTQG KMR I
Sbjct: 766  VPYVKHFLGIYSCSSSKYAMVEPRFKTGGFGYAFPKGSPLVADISRAILNVTQGGKMRTI 825

Query: 175  EKEWFNETSCLESNTEVSSNSSLGLESFWGLFLIAGIASL 294
            E  WF E+ CL+SNTE+SSN+SLGLESFWGLFLIAGIASL
Sbjct: 826  ENAWFKESRCLDSNTEISSNNSLGLESFWGLFLIAGIASL 865


>ref|XP_002339225.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222874684|gb|EEF11815.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 212

 Score =  133 bits (335), Expect = 1e-29
 Identities = 65/99 (65%), Positives = 81/99 (81%), Gaps = 1/99 (1%)
 Frame = +1

Query: 1   VPYVRHFLGTYSCSKYVMIEPRFKTGGFGYAFPKGSPLVADISRAILSVTQGDKMRAIEK 180
           VPY++ F+  Y CSKY MIEP FKTGGFG+ FPKGSPLVAD+SRA+L+VT+GDKM+ IE 
Sbjct: 29  VPYMKFFVSMY-CSKYTMIEPTFKTGGFGFVFPKGSPLVADVSRAVLNVTEGDKMKEIED 87

Query: 181 EWF-NETSCLESNTEVSSNSSLGLESFWGLFLIAGIASL 294
            W   ++SC ES+T +SSN SL ++SFWGLFLI GIAS+
Sbjct: 88  AWLGTQSSCQESSTSISSN-SLSVKSFWGLFLITGIASI 125


>ref|XP_002324363.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
            [Populus trichocarpa] gi|222865797|gb|EEF02928.1|
            glutamate-gated kainate-type ion channel receptor subunit
            GluR5 [Populus trichocarpa]
          Length = 867

 Score =  132 bits (332), Expect = 3e-29
 Identities = 65/99 (65%), Positives = 82/99 (82%), Gaps = 1/99 (1%)
 Frame = +1

Query: 1    VPYVRHFLGTYSCSKYVMIEPRFKTGGFGYAFPKGSPLVADISRAILSVTQGDKMRAIEK 180
            VPY+R FL  Y CSKY MI+P FKT GFG+AFPKGSPLV D+SRA+L++T+GDKM+ IE 
Sbjct: 718  VPYMRLFLSKY-CSKYAMIDPTFKTAGFGFAFPKGSPLVPDVSRAVLNMTEGDKMKEIEN 776

Query: 181  EWF-NETSCLESNTEVSSNSSLGLESFWGLFLIAGIASL 294
             WF  +++C +S+T V+SN SL L+SFWGLFLIAG+ASL
Sbjct: 777  AWFGKQSNCPDSSTSVTSN-SLSLKSFWGLFLIAGVASL 814


>ref|XP_002324368.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
            [Populus trichocarpa] gi|222865802|gb|EEF02933.1|
            glutamate-gated kainate-type ion channel receptor subunit
            GluR5 [Populus trichocarpa]
          Length = 885

 Score =  130 bits (327), Expect = 1e-28
 Identities = 65/99 (65%), Positives = 81/99 (81%), Gaps = 1/99 (1%)
 Frame = +1

Query: 1    VPYVRHFLGTYSCSKYVMIEPRFKTGGFGYAFPKGSPLVADISRAILSVTQGDKMRAIEK 180
            VPY+R FL  Y CSKY MI+P FKT GFG+AFPKGSPLV D+SRA+L++T+GDKM+ IE 
Sbjct: 720  VPYMRLFLSKY-CSKYAMIDPTFKTDGFGFAFPKGSPLVPDVSRAVLNMTEGDKMKEIEN 778

Query: 181  EWF-NETSCLESNTEVSSNSSLGLESFWGLFLIAGIASL 294
             WF  +++C  S+T V+SN SL L+SFWGLFLIAG+ASL
Sbjct: 779  AWFGKQSNCPYSSTSVTSN-SLSLKSFWGLFLIAGVASL 816


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