BLASTX nr result

ID: Glycyrrhiza23_contig00032270 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00032270
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containi...   157   7e-37
ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containi...   146   2e-33
ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containi...   146   2e-33
ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containi...   146   2e-33
ref|XP_002319950.1| predicted protein [Populus trichocarpa] gi|2...   141   6e-32

>ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  157 bits (398), Expect = 7e-37
 Identities = 75/77 (97%), Positives = 75/77 (97%)
 Frame = -3

Query: 315 EKEENLCIHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDA 136
           EKEENL  HSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDA
Sbjct: 651 EKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDA 710

Query: 135 NRFHHFKDGLCSCGDYW 85
           NRFHHFKDGLCSCGDYW
Sbjct: 711 NRFHHFKDGLCSCGDYW 727


>ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  146 bits (369), Expect = 2e-33
 Identities = 66/77 (85%), Positives = 73/77 (94%)
 Frame = -3

Query: 315 EKEENLCIHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDA 136
           E EE LC HSER+AVAYG+ISTAPGTTLRITKNLRAC+NCHSAIKLISKLV+REII+RDA
Sbjct: 582 EIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDA 641

Query: 135 NRFHHFKDGLCSCGDYW 85
            RFHHFKDG+CSCGD+W
Sbjct: 642 KRFHHFKDGVCSCGDFW 658


>ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  146 bits (369), Expect = 2e-33
 Identities = 66/77 (85%), Positives = 73/77 (94%)
 Frame = -3

Query: 315 EKEENLCIHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDA 136
           E EE LC HSER+AVAYG+ISTAPGTTLRITKNLRAC+NCHSAIKLISKLV+REII+RDA
Sbjct: 597 EIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDA 656

Query: 135 NRFHHFKDGLCSCGDYW 85
            RFHHFKDG+CSCGD+W
Sbjct: 657 KRFHHFKDGVCSCGDFW 673


>ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera] gi|296081235|emb|CBI17979.3| unnamed
           protein product [Vitis vinifera]
          Length = 742

 Score =  146 bits (368), Expect = 2e-33
 Identities = 66/77 (85%), Positives = 72/77 (93%)
 Frame = -3

Query: 315 EKEENLCIHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDA 136
           EKEE LC HSER+A+AYGLISTAPGTTLRITKNLRAC+NCHSA KLISKLV REI+VRDA
Sbjct: 666 EKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVVRDA 725

Query: 135 NRFHHFKDGLCSCGDYW 85
           NRFHHFK+G+CSC DYW
Sbjct: 726 NRFHHFKNGVCSCRDYW 742


>ref|XP_002319950.1| predicted protein [Populus trichocarpa] gi|222858326|gb|EEE95873.1|
           predicted protein [Populus trichocarpa]
          Length = 746

 Score =  141 bits (355), Expect = 6e-32
 Identities = 65/77 (84%), Positives = 69/77 (89%)
 Frame = -3

Query: 315 EKEENLCIHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDA 136
           E EE LC HSER+A+AYGLIST PGTTLRITKNLRAC NCH+AIKLISKLV REI+VRDA
Sbjct: 670 ETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVVRDA 729

Query: 135 NRFHHFKDGLCSCGDYW 85
            RFHHFKDG CSCGDYW
Sbjct: 730 CRFHHFKDGACSCGDYW 746


Top