BLASTX nr result
ID: Glycyrrhiza23_contig00032137
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00032137
(389 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AGG09518.1| RNA polymerase subunit C, partial (chloroplast) [... 259 2e-67
ref|YP_538764.1| RNA polymerase beta' subunit [Glycine max] gi|8... 259 2e-67
gb|ADQ28845.1| RNA polymerase subunit [Hylodesmum oldhamii] gi|3... 259 2e-67
gb|AAL07335.1| rpoC1 [Glycine max] 259 2e-67
gb|ACN75333.1| RNA polymerase C [Lonchocarpus sp. MAG-2009] 259 2e-67
>gb|AGG09518.1| RNA polymerase subunit C, partial (chloroplast) [Ulva intestinalis]
Length = 175
Score = 259 bits (662), Expect = 2e-67
Identities = 127/129 (98%), Positives = 129/129 (100%)
Frame = -2
Query: 388 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHF 209
IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHF
Sbjct: 21 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHF 80
Query: 208 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLH 29
ASNIG+AKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLH
Sbjct: 81 ASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 140
Query: 28 PLVCKGFNA 2
PLVCKGFNA
Sbjct: 141 PLVCKGFNA 149
>ref|YP_538764.1| RNA polymerase beta' subunit [Glycine max]
gi|88984780|sp|Q8HVY4.2|RPOC1_SOYBN RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|83595743|gb|ABC25124.1| RNA polymerase beta subunit
[Glycine max]
Length = 687
Score = 259 bits (662), Expect = 2e-67
Identities = 127/129 (98%), Positives = 129/129 (100%)
Frame = -2
Query: 388 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHF 209
IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHF
Sbjct: 362 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHF 421
Query: 208 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLH 29
ASNIG+AKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLH
Sbjct: 422 ASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 481
Query: 28 PLVCKGFNA 2
PLVCKGFNA
Sbjct: 482 PLVCKGFNA 490
>gb|ADQ28845.1| RNA polymerase subunit [Hylodesmum oldhamii]
gi|312146527|gb|ADQ28846.1| RNA polymerase subunit
[Hylodesmum podocarpum] gi|312146529|gb|ADQ28847.1| RNA
polymerase subunit [Kummerowia stipulacea]
gi|312146531|gb|ADQ28848.1| RNA polymerase subunit
[Kummerowia striata] gi|312146533|gb|ADQ28849.1| RNA
polymerase subunit [Lespedeza angustifolia]
gi|312146535|gb|ADQ28850.1| RNA polymerase subunit
[Lespedeza bicolor] gi|312146537|gb|ADQ28851.1| RNA
polymerase subunit [Lespedeza buergeri]
gi|312146539|gb|ADQ28852.1| RNA polymerase subunit
[Lespedeza capitata] gi|312146541|gb|ADQ28853.1| RNA
polymerase subunit [Lespedeza caraganae]
gi|312146543|gb|ADQ28854.1| RNA polymerase subunit
[Lespedeza chinensis] gi|312146545|gb|ADQ28855.1| RNA
polymerase subunit [Lespedeza cuneata]
gi|312146547|gb|ADQ28856.1| RNA polymerase subunit
[Lespedeza cyrtobotrya] gi|312146549|gb|ADQ28857.1| RNA
polymerase subunit [Lespedeza davurica]
gi|312146551|gb|ADQ28858.1| RNA polymerase subunit
[Lespedeza davidii] gi|312146553|gb|ADQ28859.1| RNA
polymerase subunit [Lespedeza floribunda]
gi|312146555|gb|ADQ28860.1| RNA polymerase subunit
[Lespedeza thunbergii subsp. formosa]
gi|312146557|gb|ADQ28861.1| RNA polymerase subunit
[Lespedeza forrestii] gi|312146559|gb|ADQ28862.1| RNA
polymerase subunit [Lespedeza hirta]
gi|312146561|gb|ADQ28863.1| RNA polymerase subunit
[Lespedeza homoloba] gi|312146563|gb|ADQ28864.1| RNA
polymerase subunit [Lespedeza inschanica]
gi|312146565|gb|ADQ28865.1| RNA polymerase subunit
[Lespedeza frutescens] gi|312146567|gb|ADQ28866.1| RNA
polymerase subunit [Lespedeza japonica]
gi|312146569|gb|ADQ28867.1| RNA polymerase subunit
[Lespedeza juncea] gi|312146571|gb|ADQ28868.1| RNA
polymerase subunit [Lespedeza leptostachya]
gi|312146573|gb|ADQ28869.1| RNA polymerase subunit
[Lespedeza lichiyuniae] gi|312146575|gb|ADQ28870.1| RNA
polymerase subunit [Lespedeza maritima]
gi|312146577|gb|ADQ28871.1| RNA polymerase subunit
[Lespedeza maximowiczii] gi|312146579|gb|ADQ28872.1| RNA
polymerase subunit [Lespedeza melanantha]
gi|312146581|gb|ADQ28873.1| RNA polymerase subunit
[Lespedeza nipponica] gi|312146583|gb|ADQ28874.1| RNA
polymerase subunit [Lespedeza patens]
gi|312146585|gb|ADQ28875.1| RNA polymerase subunit
[Lespedeza pilosa] gi|312146587|gb|ADQ28876.1| RNA
polymerase subunit [Lespedeza procumbens]
gi|312146589|gb|ADQ28877.1| RNA polymerase subunit
[Lespedeza repens] gi|312146591|gb|ADQ28878.1| RNA
polymerase subunit [Lespedeza stuevei]
gi|312146593|gb|ADQ28879.1| RNA polymerase subunit
[Lespedeza thunbergii] gi|312146595|gb|ADQ28880.1| RNA
polymerase subunit [Lespedeza tomentosa]
gi|312146597|gb|ADQ28881.1| RNA polymerase subunit
[Lespedeza virginica] gi|312146599|gb|ADQ28882.1| RNA
polymerase subunit [Lespedeza violacea]
gi|312146601|gb|ADQ28883.1| RNA polymerase subunit
[Lespedeza virgata]
Length = 191
Score = 259 bits (662), Expect = 2e-67
Identities = 127/129 (98%), Positives = 129/129 (100%)
Frame = -2
Query: 388 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHF 209
IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHF
Sbjct: 21 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHF 80
Query: 208 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLH 29
ASNIG+AKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLH
Sbjct: 81 ASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 140
Query: 28 PLVCKGFNA 2
PLVCKGFNA
Sbjct: 141 PLVCKGFNA 149
>gb|AAL07335.1| rpoC1 [Glycine max]
Length = 682
Score = 259 bits (662), Expect = 2e-67
Identities = 127/129 (98%), Positives = 129/129 (100%)
Frame = -2
Query: 388 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHF 209
IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHF
Sbjct: 360 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHF 419
Query: 208 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLH 29
ASNIG+AKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLH
Sbjct: 420 ASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 479
Query: 28 PLVCKGFNA 2
PLVCKGFNA
Sbjct: 480 PLVCKGFNA 488
>gb|ACN75333.1| RNA polymerase C [Lonchocarpus sp. MAG-2009]
Length = 194
Score = 259 bits (661), Expect = 2e-67
Identities = 126/129 (97%), Positives = 129/129 (100%)
Frame = -2
Query: 388 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHF 209
IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHF
Sbjct: 23 IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHF 82
Query: 208 ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLH 29
ASNIG+AKSKIREKEPIVWEILQEVMQGHP+LLNRAPTLHRLGIQAFQP+LVEGRAICLH
Sbjct: 83 ASNIGIAKSKIREKEPIVWEILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLH 142
Query: 28 PLVCKGFNA 2
PLVCKGFNA
Sbjct: 143 PLVCKGFNA 151