BLASTX nr result

ID: Glycyrrhiza23_contig00031106 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00031106
         (272 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    72   4e-11
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...    71   1e-10
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...    67   2e-09
ref|XP_002516137.1| conserved hypothetical protein [Ricinus comm...    64   2e-08
ref|XP_002459654.1| hypothetical protein SORBIDRAFT_02g008047 [S...    63   2e-08

>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 34/83 (40%), Positives = 51/83 (61%)
 Frame = +2

Query: 20   VLNAYCLALGQKINSSKSRVVCVKYVNPVIKHQLSNILRIHLLDNPGMYLGIPADWGRCR 199
            +L+ YC+A GQ IN  KS +       P I H LS+I++I ++ +PG YLG+P  W R +
Sbjct: 1311 LLHTYCIASGQLINVEKSSIFFSPNTPPEIAHLLSSIMQIPVVSDPGTYLGLPTFWHRSK 1370

Query: 200  TNELAWIKERICAKLQGWKENLL 268
               L +IK+ I  K++GWK+  L
Sbjct: 1371 KKALGFIKDSILRKVKGWKQATL 1393


>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 42/86 (48%), Positives = 52/86 (60%)
 Frame = +2

Query: 11  IVRVLNAYCLALGQKINSSKSRVVCVKYVNPVIKHQLSNILRIHLLDNPGMYLGIPADWG 190
           IV +LN Y  A GQKIN  KS V   K V+   K +LSNIL++  ++    YLGIP+  G
Sbjct: 703 IVEILNLYEQASGQKINYDKSEVSFSKGVSIAQKEELSNILQMKQVERHMKYLGIPSITG 762

Query: 191 RCRTNELAWIKERICAKLQGWKENLL 268
           R RT     + +RI  KLQGWKE LL
Sbjct: 763 RSRTAIFDSLMDRIWKKLQGWKEKLL 788


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 40/86 (46%), Positives = 51/86 (59%)
 Frame = +2

Query: 11  IVRVLNAYCLALGQKINSSKSRVVCVKYVNPVIKHQLSNILRIHLLDNPGMYLGIPADWG 190
           IV +LN Y LA GQKIN  KS V   + V+   K +L+NIL +  +D    YLGIP+  G
Sbjct: 703 IVDILNQYELASGQKINYEKSEVSYSRGVSVSQKDELTNILNMRQVDRHEKYLGIPSISG 762

Query: 191 RCRTNELAWIKERICAKLQGWKENLL 268
           R +      + +RI  KLQGWKE LL
Sbjct: 763 RSKKAIFDSLIDRIWKKLQGWKEKLL 788


>ref|XP_002516137.1| conserved hypothetical protein [Ricinus communis]
           gi|223544623|gb|EEF46139.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 310

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 31/83 (37%), Positives = 48/83 (57%)
 Frame = +2

Query: 20  VLNAYCLALGQKINSSKSRVVCVKYVNPVIKHQLSNILRIHLLDNPGMYLGIPADWGRCR 199
           +L+ Y  A  Q IN  KS ++  K     IKH +  +L +  +    M+L +P+ WGR +
Sbjct: 15  ILHEYGQATRQNINEVKSSILFAKDTPNQIKHNVKKVLNMKEMTGSEMHLRLPSLWGRSK 74

Query: 200 TNELAWIKERICAKLQGWKENLL 268
              L+++KERI  K+QGWK+ LL
Sbjct: 75  IKTLSFLKERIIHKIQGWKQRLL 97


>ref|XP_002459654.1| hypothetical protein SORBIDRAFT_02g008047 [Sorghum bicolor]
           gi|241923031|gb|EER96175.1| hypothetical protein
           SORBIDRAFT_02g008047 [Sorghum bicolor]
          Length = 303

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 32/86 (37%), Positives = 47/86 (54%)
 Frame = +2

Query: 11  IVRVLNAYCLALGQKINSSKSRVVCVKYVNPVIKHQLSNILRIHLLDNPGMYLGIPADWG 190
           I  VLN YC A GQ+IN  KS +   K V   I+  + ++L +H       YLG+P+D G
Sbjct: 41  IKEVLNTYCRASGQQINMDKSFIHFAKGVRQNIRDDIKSLLEVHNEALSEKYLGMPSDVG 100

Query: 191 RCRTNELAWIKERICAKLQGWKENLL 268
              T    ++K+R+  K++GW E  L
Sbjct: 101 AASTGAFKYLKDRMWGKIEGWLEQCL 126


Top