BLASTX nr result

ID: Glycyrrhiza23_contig00030540 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00030540
         (290 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003603311.1| Chromatin remodeling complex subunit [Medica...   142   4e-32
ref|XP_003522438.1| PREDICTED: CHD3-type chromatin-remodeling fa...   140   8e-32
ref|XP_003526210.1| PREDICTED: CHD3-type chromatin-remodeling fa...   140   1e-31
ref|XP_004157094.1| PREDICTED: LOW QUALITY PROTEIN: CHD3-type ch...   120   9e-26
ref|XP_004145509.1| PREDICTED: CHD3-type chromatin-remodeling fa...   120   9e-26

>ref|XP_003603311.1| Chromatin remodeling complex subunit [Medicago truncatula]
            gi|355492359|gb|AES73562.1| Chromatin remodeling complex
            subunit [Medicago truncatula]
          Length = 1483

 Score =  142 bits (357), Expect = 4e-32
 Identities = 69/95 (72%), Positives = 81/95 (85%)
 Frame = -2

Query: 286  IDFVKKRILLLEKGLNAEYQKEYFGDTKANEVTNEELRNEPKATNIQSYILGENDTQMID 107
            ++FVKKR+LLLEKGLNAEYQKEYFGD KA EVTNEEL++EPK+T I S+I  + DTQMID
Sbjct: 1268 VEFVKKRVLLLEKGLNAEYQKEYFGDPKAGEVTNEELKSEPKSTTIPSFISVDTDTQMID 1327

Query: 106  QLPQVEAIAPEEISTFACDNDPNRLKLACLYNEMC 2
            QLPQVE IAPE++S   CD+D NRL+L  LYNEMC
Sbjct: 1328 QLPQVEIIAPEDVSV-VCDSDSNRLELVRLYNEMC 1361


>ref|XP_003522438.1| PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Glycine
            max]
          Length = 1441

 Score =  140 bits (354), Expect = 8e-32
 Identities = 69/95 (72%), Positives = 82/95 (86%)
 Frame = -2

Query: 286  IDFVKKRILLLEKGLNAEYQKEYFGDTKANEVTNEELRNEPKATNIQSYILGENDTQMID 107
            ++F+KKR+LLLEKGLNAEYQKEYFGD K+NE TNEEL++E KATN  S  LG++DT+MID
Sbjct: 1196 VEFIKKRVLLLEKGLNAEYQKEYFGDPKSNEATNEELKSETKATNFPSDKLGDSDTKMID 1255

Query: 106  QLPQVEAIAPEEISTFACDNDPNRLKLACLYNEMC 2
            QLPQVE IA EEI   ACD+DPN+L+LA LYNEMC
Sbjct: 1256 QLPQVETIASEEI-VAACDSDPNQLELARLYNEMC 1289


>ref|XP_003526210.1| PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Glycine
            max]
          Length = 1440

 Score =  140 bits (352), Expect = 1e-31
 Identities = 69/95 (72%), Positives = 79/95 (83%)
 Frame = -2

Query: 286  IDFVKKRILLLEKGLNAEYQKEYFGDTKANEVTNEELRNEPKATNIQSYILGENDTQMID 107
            ++F+KKR+LLLEKGLNAEYQKEYFGD KANEVTNEEL++E KATN     LG+ DTQMID
Sbjct: 1196 VEFIKKRVLLLEKGLNAEYQKEYFGDPKANEVTNEELKSETKATNFPGDKLGDTDTQMID 1255

Query: 106  QLPQVEAIAPEEISTFACDNDPNRLKLACLYNEMC 2
            QLPQV+ IA EEIS   CD+DP RL+L  LYNEMC
Sbjct: 1256 QLPQVQTIASEEISA-ECDSDPTRLELVRLYNEMC 1289


>ref|XP_004157094.1| PREDICTED: LOW QUALITY PROTEIN: CHD3-type chromatin-remodeling factor
            PICKLE-like [Cucumis sativus]
          Length = 1474

 Score =  120 bits (302), Expect = 9e-26
 Identities = 57/95 (60%), Positives = 75/95 (78%)
 Frame = -2

Query: 286  IDFVKKRILLLEKGLNAEYQKEYFGDTKANEVTNEELRNEPKATNIQSYILGENDTQMID 107
            ++FVKKR+LLLEKGLNAEYQKEYFGD+K N++T+E++ NE K +N+      E DTQ  D
Sbjct: 1200 VEFVKKRVLLLEKGLNAEYQKEYFGDSKGNDITSEDIENESKVSNLPGASTVETDTQKAD 1259

Query: 106  QLPQVEAIAPEEISTFACDNDPNRLKLACLYNEMC 2
            QLPQV+ I+  E S  ACD++P+RL+L+ LYNEMC
Sbjct: 1260 QLPQVDPISSRETSA-ACDDNPDRLELSRLYNEMC 1293


>ref|XP_004145509.1| PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Cucumis
            sativus]
          Length = 1474

 Score =  120 bits (302), Expect = 9e-26
 Identities = 57/95 (60%), Positives = 75/95 (78%)
 Frame = -2

Query: 286  IDFVKKRILLLEKGLNAEYQKEYFGDTKANEVTNEELRNEPKATNIQSYILGENDTQMID 107
            ++FVKKR+LLLEKGLNAEYQKEYFGD+K N++T+E++ NE K +N+      E DTQ  D
Sbjct: 1200 VEFVKKRVLLLEKGLNAEYQKEYFGDSKGNDITSEDIENESKVSNLPGASTVETDTQKAD 1259

Query: 106  QLPQVEAIAPEEISTFACDNDPNRLKLACLYNEMC 2
            QLPQV+ I+  E S  ACD++P+RL+L+ LYNEMC
Sbjct: 1260 QLPQVDPISSRETSA-ACDDNPDRLELSRLYNEMC 1293


Top