BLASTX nr result

ID: Glycyrrhiza23_contig00030259 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00030259
         (305 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003603092.1| Cyclin D3-1 [Medicago truncatula] gi|3554921...   124   6e-27
ref|XP_003603091.1| Cyclin D3-1 [Medicago truncatula] gi|3554921...   124   6e-27
ref|NP_001241910.1| uncharacterized protein LOC100804102 [Glycin...   114   6e-24
gb|ADD51364.1| D3-type cyclin [Malus x domestica]                     112   3e-23
dbj|BAE80324.1| cyclin D3-1 [Camellia sinensis]                       108   4e-22

>ref|XP_003603092.1| Cyclin D3-1 [Medicago truncatula] gi|355492140|gb|AES73343.1|
           Cyclin D3-1 [Medicago truncatula]
          Length = 177

 Score =  124 bits (312), Expect = 6e-27
 Identities = 68/104 (65%), Positives = 81/104 (77%), Gaps = 3/104 (2%)
 Frame = -2

Query: 304 LATATMMHVVTNVEHSLAVEYQNQLLGILGFNKDKVEECYKLMLEVVSGYNK-SKFNKRK 128
           LATATM+HV  +VE SL  EYQ QLLGILG NKDKV+EC KL+L++ SGY + ++ NKRK
Sbjct: 66  LATATMVHVFNSVEPSLGDEYQTQLLGILGINKDKVDECGKLLLKLWSGYEEGNECNKRK 125

Query: 127 FGSIPSSPNGIMEGSLSSDSSNEYWEVDHASVSSS--PLSKKTR 2
           FGSIPSSP G+ME S S D+SN+ W +  ASVSSS  PLSKK R
Sbjct: 126 FGSIPSSPKGVMEMSFSCDNSNDSWAIIAASVSSSPEPLSKKIR 169


>ref|XP_003603091.1| Cyclin D3-1 [Medicago truncatula] gi|355492139|gb|AES73342.1|
           Cyclin D3-1 [Medicago truncatula]
           gi|388511523|gb|AFK43823.1| unknown [Medicago
           truncatula]
          Length = 348

 Score =  124 bits (312), Expect = 6e-27
 Identities = 68/104 (65%), Positives = 81/104 (77%), Gaps = 3/104 (2%)
 Frame = -2

Query: 304 LATATMMHVVTNVEHSLAVEYQNQLLGILGFNKDKVEECYKLMLEVVSGYNK-SKFNKRK 128
           LATATM+HV  +VE SL  EYQ QLLGILG NKDKV+EC KL+L++ SGY + ++ NKRK
Sbjct: 237 LATATMVHVFNSVEPSLGDEYQTQLLGILGINKDKVDECGKLLLKLWSGYEEGNECNKRK 296

Query: 127 FGSIPSSPNGIMEGSLSSDSSNEYWEVDHASVSSS--PLSKKTR 2
           FGSIPSSP G+ME S S D+SN+ W +  ASVSSS  PLSKK R
Sbjct: 297 FGSIPSSPKGVMEMSFSCDNSNDSWAIIAASVSSSPEPLSKKIR 340


>ref|NP_001241910.1| uncharacterized protein LOC100804102 [Glycine max]
           gi|255639037|gb|ACU19819.1| unknown [Glycine max]
          Length = 383

 Score =  114 bits (286), Expect = 6e-24
 Identities = 69/108 (63%), Positives = 80/108 (74%), Gaps = 7/108 (6%)
 Frame = -2

Query: 304 LATATMMHVVTNVEHSLAVEYQNQLLGILGFNKDKVEECYKLMLEVVSGYN----KSKFN 137
           LATAT+M VV  VE  L VEYQ+QLLGILG +K+KVEECY LM+EVVSGY+    ++K  
Sbjct: 258 LATATVMRVVNTVEPRLGVEYQDQLLGILGIDKEKVEECYNLMMEVVSGYDEEGKRTKLK 317

Query: 136 KRKFGSI--PSSPNGIMEGSLSSD-SSNEYWEVDHASVSSSPLSKKTR 2
           KRK  SI   SS NG+MEGS S D SSNE WE+  +SVSSS  SKKTR
Sbjct: 318 KRKLESIIPCSSQNGVMEGSFSCDSSSNESWELGASSVSSS--SKKTR 363


>gb|ADD51364.1| D3-type cyclin [Malus x domestica]
          Length = 376

 Score =  112 bits (280), Expect = 3e-23
 Identities = 64/104 (61%), Positives = 79/104 (75%), Gaps = 5/104 (4%)
 Frame = -2

Query: 304 LATATMMHVVTNVEHSLAVEYQNQLLGILGFNKDKVEECYKLMLEVV-SGYNKS--KFNK 134
           +ATATM+HVV N+E  L +EYQ QLLGILG NKDKV++C KL+ E+  SG N S  + NK
Sbjct: 257 VATATMLHVVKNMEPCLLIEYQTQLLGILGINKDKVDDCCKLISELTSSGGNGSGKQSNK 316

Query: 133 RKFGSIPSSPNGIMEGSLSSDSSNEYWEVDHASVSSS--PLSKK 8
           RKFGS+P SP+G+M+ S SSDSSN+ W    +SVSSS  PLSKK
Sbjct: 317 RKFGSVPGSPSGVMDVSFSSDSSNDSWATG-SSVSSSPEPLSKK 359


>dbj|BAE80324.1| cyclin D3-1 [Camellia sinensis]
          Length = 371

 Score =  108 bits (270), Expect = 4e-22
 Identities = 64/108 (59%), Positives = 78/108 (72%), Gaps = 7/108 (6%)
 Frame = -2

Query: 304 LATATMMHVVTNVEHSLAVEYQNQLLGILGFNKDKVEECYKLMLEVVSGYNKSKFNKRKF 125
           L+TATM+ V +++E  LAVEYQNQLLGIL  +KDKVE+CYKLMLE  SG ++S  NKRKF
Sbjct: 251 LSTATMLLVFSSLEPCLAVEYQNQLLGILQIDKDKVEDCYKLMLESTSGIHQS--NKRKF 308

Query: 124 GSIPSSPNGIMEGSLSSDSSNEYWEVD-----HASVSSS--PLSKKTR 2
            S+P SPN + +   SSDSSN+ W V       ASV SS  PLSKK+R
Sbjct: 309 RSMPGSPNCVTDVCFSSDSSNDSWAVTSSASASASVCSSPEPLSKKSR 356


Top