BLASTX nr result

ID: Glycyrrhiza23_contig00030236 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00030236
         (348 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003543596.1| PREDICTED: WD-40 repeat-containing protein M...   202   2e-50
ref|XP_003632850.1| PREDICTED: WD-40 repeat-containing protein M...   183   1e-44
gb|AFK45971.1| unknown [Medicago truncatula]                          178   5e-43
ref|XP_003597606.1| WD-40 repeat-containing protein MSI4 [Medica...   178   5e-43
ref|XP_004158447.1| PREDICTED: WD-40 repeat-containing protein M...   177   1e-42

>ref|XP_003543596.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Glycine max]
          Length = 453

 Score =  202 bits (514), Expect = 2e-50
 Identities = 98/114 (85%), Positives = 100/114 (87%)
 Frame = +3

Query: 6   IVATHTDGPDVLIWDVESQPNRHAVLGAPTSRPDLVLTGHKDNAEFALAMCSTEPLVLSG 185
           IVATHTD P+VLIWDVE+QPNRHAVLGA TSRPDLVLTGHKDNAEFALAMC TEP VLSG
Sbjct: 122 IVATHTDSPEVLIWDVETQPNRHAVLGATTSRPDLVLTGHKDNAEFALAMCPTEPFVLSG 181

Query: 186 GKDKCVVLWSVHDHISTLATEAGSNNKQGSKVGVNNEKATGSPSIGPRGIYQGH 347
           GKDKCVVLWSVHDHISTLA E  SN KQGSK G NN KAT SP I PRGIYQGH
Sbjct: 182 GKDKCVVLWSVHDHISTLAVETASNVKQGSKTGGNNTKATESPCIEPRGIYQGH 235


>ref|XP_003632850.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Vitis
           vinifera] gi|297743080|emb|CBI35947.3| unnamed protein
           product [Vitis vinifera]
          Length = 453

 Score =  183 bits (464), Expect = 1e-44
 Identities = 90/114 (78%), Positives = 95/114 (83%)
 Frame = +3

Query: 6   IVATHTDGPDVLIWDVESQPNRHAVLGAPTSRPDLVLTGHKDNAEFALAMCSTEPLVLSG 185
           IVATHTD PDVLIWDVE+QPNRHAVLG P SRPDL+LTGHKDNAEFALAMC TEPLVLSG
Sbjct: 129 IVATHTDSPDVLIWDVETQPNRHAVLGTPESRPDLILTGHKDNAEFALAMCPTEPLVLSG 188

Query: 186 GKDKCVVLWSVHDHISTLATEAGSNNKQGSKVGVNNEKATGSPSIGPRGIYQGH 347
           GKDK VVLWS+ DHISTLA + GS  K  SK G  N+K   SPSIG RGIYQGH
Sbjct: 189 GKDKSVVLWSIQDHISTLAADPGS-AKSTSKAGGGNDKPVESPSIGARGIYQGH 241


>gb|AFK45971.1| unknown [Medicago truncatula]
          Length = 341

 Score =  178 bits (451), Expect = 5e-43
 Identities = 86/116 (74%), Positives = 99/116 (85%), Gaps = 1/116 (0%)
 Frame = +3

Query: 3   NIVATHTDGPDVLIWDVESQPNRH-AVLGAPTSRPDLVLTGHKDNAEFALAMCSTEPLVL 179
           NIVATHTD P+V+IW+VESQPNR+ A L APTS PDLVLTGHKDNAEFALAMCSTEP VL
Sbjct: 131 NIVATHTDSPNVMIWNVESQPNRNNAALDAPTSIPDLVLTGHKDNAEFALAMCSTEPFVL 190

Query: 180 SGGKDKCVVLWSVHDHISTLATEAGSNNKQGSKVGVNNEKATGSPSIGPRGIYQGH 347
           SGG+DK VVLWS+HDHI+TLATE   +  +GS VG N+EKA  SPS+G RG+Y+GH
Sbjct: 191 SGGRDKLVVLWSIHDHIATLATEEEPDVNEGSNVGGNSEKAAQSPSVGARGVYRGH 246


>ref|XP_003597606.1| WD-40 repeat-containing protein MSI4 [Medicago truncatula]
           gi|124360382|gb|ABN08395.1| WD40-like [Medicago
           truncatula] gi|355486654|gb|AES67857.1| WD-40
           repeat-containing protein MSI4 [Medicago truncatula]
          Length = 479

 Score =  178 bits (451), Expect = 5e-43
 Identities = 86/116 (74%), Positives = 99/116 (85%), Gaps = 1/116 (0%)
 Frame = +3

Query: 3   NIVATHTDGPDVLIWDVESQPNRH-AVLGAPTSRPDLVLTGHKDNAEFALAMCSTEPLVL 179
           NIVATHTD P+V+IW+VESQPNR+ A L APTS PDLVLTGHKDNAEFALAMCSTEP VL
Sbjct: 131 NIVATHTDSPNVMIWNVESQPNRNNAALDAPTSIPDLVLTGHKDNAEFALAMCSTEPFVL 190

Query: 180 SGGKDKCVVLWSVHDHISTLATEAGSNNKQGSKVGVNNEKATGSPSIGPRGIYQGH 347
           SGG+DK VVLWS+HDHI+TLATE   +  +GS VG N+EKA  SPS+G RG+Y+GH
Sbjct: 191 SGGRDKLVVLWSIHDHIATLATEEEPDVNEGSNVGGNSEKAAQSPSVGARGVYRGH 246


>ref|XP_004158447.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Cucumis
           sativus]
          Length = 518

 Score =  177 bits (448), Expect = 1e-42
 Identities = 85/120 (70%), Positives = 97/120 (80%), Gaps = 6/120 (5%)
 Frame = +3

Query: 6   IVATHTDGPDVLIWDVESQPNRHAVLGAPTSRPDLVLTGHKDNAEFALAMCSTEPLVLSG 185
           IVATHTD PDVLIWDVE+QPNRHAVLGA  SRPDL+LTGH++NAEFALAMC TEP VLSG
Sbjct: 180 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQENAEFALAMCPTEPYVLSG 239

Query: 186 GKDKCVVLWSVHDHISTLATEAGSNNKQGS------KVGVNNEKATGSPSIGPRGIYQGH 347
           GKDK VVLWS+ DHI+T AT+AG++   GS      K G  N+KA+  PSIGPRG+Y GH
Sbjct: 240 GKDKLVVLWSIQDHITTSATDAGASKSPGSGGSIIKKPGEANDKASDGPSIGPRGVYHGH 299


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