BLASTX nr result

ID: Glycyrrhiza23_contig00030235 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00030235
         (255 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003543596.1| PREDICTED: WD-40 repeat-containing protein M...   164   5e-39
ref|XP_002527406.1| WD-repeat protein, putative [Ricinus communi...   162   4e-38
gb|AFK45971.1| unknown [Medicago truncatula]                          160   1e-37
ref|XP_003597606.1| WD-40 repeat-containing protein MSI4 [Medica...   160   1e-37
ref|XP_002327543.1| nucleosome/chromatin assembly factor group [...   159   2e-37

>ref|XP_003543596.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Glycine max]
          Length = 453

 Score =  164 bits (416), Expect = 5e-39
 Identities = 76/84 (90%), Positives = 80/84 (95%)
 Frame = -2

Query: 254 DTVEDVQFCPSSAQEFCSVGDDSCLMLWDARVGSAPVVKVEKAHDGDLHCVDWSPHDINF 75
           DTVEDVQFCPSSA EFCSVGDDS L+LWDARVGSAPVVKV+KAH+GDLHCVDWSPHDINF
Sbjct: 237 DTVEDVQFCPSSALEFCSVGDDSRLILWDARVGSAPVVKVDKAHNGDLHCVDWSPHDINF 296

Query: 74  ILTGSADNTVHMFDRRKLNSSGVG 3
           ILTGSADNT+HMFDRR L SSGVG
Sbjct: 297 ILTGSADNTIHMFDRRNLTSSGVG 320


>ref|XP_002527406.1| WD-repeat protein, putative [Ricinus communis]
           gi|223533216|gb|EEF34972.1| WD-repeat protein, putative
           [Ricinus communis]
          Length = 466

 Score =  162 bits (409), Expect = 4e-38
 Identities = 71/84 (84%), Positives = 78/84 (92%)
 Frame = -2

Query: 254 DTVEDVQFCPSSAQEFCSVGDDSCLMLWDARVGSAPVVKVEKAHDGDLHCVDWSPHDINF 75
           DTVEDVQFCPSSA EFCSVGDDSCL+LWDAR GS+PVVKVEKAH+ DLHCVDW+PHD+NF
Sbjct: 248 DTVEDVQFCPSSAHEFCSVGDDSCLILWDARTGSSPVVKVEKAHNSDLHCVDWNPHDVNF 307

Query: 74  ILTGSADNTVHMFDRRKLNSSGVG 3
           ILTGSADNT+HMFDRR L S G+G
Sbjct: 308 ILTGSADNTIHMFDRRSLTSGGLG 331


>gb|AFK45971.1| unknown [Medicago truncatula]
          Length = 341

 Score =  160 bits (405), Expect = 1e-37
 Identities = 73/82 (89%), Positives = 77/82 (93%)
 Frame = -2

Query: 254 DTVEDVQFCPSSAQEFCSVGDDSCLMLWDARVGSAPVVKVEKAHDGDLHCVDWSPHDINF 75
           DTVEDVQFCPSSAQEFCSVGDDSCL+LWDARVGS P VKVEKAHDGD+HCVDW+ HDINF
Sbjct: 248 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARVGSFPAVKVEKAHDGDVHCVDWNTHDINF 307

Query: 74  ILTGSADNTVHMFDRRKLNSSG 9
           ILTGSADNTV MFDRRKLN+ G
Sbjct: 308 ILTGSADNTVRMFDRRKLNNRG 329


>ref|XP_003597606.1| WD-40 repeat-containing protein MSI4 [Medicago truncatula]
           gi|124360382|gb|ABN08395.1| WD40-like [Medicago
           truncatula] gi|355486654|gb|AES67857.1| WD-40
           repeat-containing protein MSI4 [Medicago truncatula]
          Length = 479

 Score =  160 bits (405), Expect = 1e-37
 Identities = 73/82 (89%), Positives = 77/82 (93%)
 Frame = -2

Query: 254 DTVEDVQFCPSSAQEFCSVGDDSCLMLWDARVGSAPVVKVEKAHDGDLHCVDWSPHDINF 75
           DTVEDVQFCPSSAQEFCSVGDDSCL+LWDARVGS P VKVEKAHDGD+HCVDW+ HDINF
Sbjct: 248 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARVGSFPAVKVEKAHDGDVHCVDWNTHDINF 307

Query: 74  ILTGSADNTVHMFDRRKLNSSG 9
           ILTGSADNTV MFDRRKLN+ G
Sbjct: 308 ILTGSADNTVRMFDRRKLNNRG 329


>ref|XP_002327543.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]
           gi|222836097|gb|EEE74518.1| nucleosome/chromatin
           assembly factor group [Populus trichocarpa]
          Length = 465

 Score =  159 bits (402), Expect = 2e-37
 Identities = 71/84 (84%), Positives = 76/84 (90%)
 Frame = -2

Query: 254 DTVEDVQFCPSSAQEFCSVGDDSCLMLWDARVGSAPVVKVEKAHDGDLHCVDWSPHDINF 75
           DTVEDVQFCPSSAQEFCSVGDDSCL+LWDAR G  PVVKVEKAH+ DLHCVDW+PHD+N 
Sbjct: 248 DTVEDVQFCPSSAQEFCSVGDDSCLVLWDARAGCTPVVKVEKAHNADLHCVDWNPHDVNL 307

Query: 74  ILTGSADNTVHMFDRRKLNSSGVG 3
           ILTGSADN+VHMFDRR LN  GVG
Sbjct: 308 ILTGSADNSVHMFDRRNLNLGGVG 331


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