BLASTX nr result
ID: Glycyrrhiza23_contig00029660
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00029660
(754 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E sub... 325 6e-87
ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E sub... 321 9e-86
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag... 308 6e-82
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 239 6e-61
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 239 6e-61
>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine max]
Length = 2020
Score = 325 bits (833), Expect = 6e-87
Identities = 164/273 (60%), Positives = 194/273 (71%), Gaps = 24/273 (8%)
Frame = -2
Query: 753 MVAKGVLREHLLLLGSSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPRKCFERA 574
MVAKGVLREHL+LL SSMTCGGNLVGFNTGGYKAL+RQLNIQVPFTDATLFTP+KCFERA
Sbjct: 1138 MVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTPKKCFERA 1197
Query: 573 AEKCHADSLSSIVASCSWGKHVAVGTGSRFDVVWNSKEITSNDIEGMDVYNFLHMVKGLN 394
AEKCH DSLSSIVASCSWGKHVAVGTGS+FD+VW+S EI SN+IEGMDVY+FLHMVK +
Sbjct: 1198 AEKCHTDSLSSIVASCSWGKHVAVGTGSKFDIVWDSSEIKSNEIEGMDVYSFLHMVKSVT 1257
Query: 393 NGEEENNACXXXXXXXXXXXENVDWGMSPQHASEFDAVFEENFELLNGSTSNGWDANSDQ 214
NGEEE +AC E +D GMSPQH S F+AVFEEN E+LNGSTSNGWD +S+Q
Sbjct: 1258 NGEEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEAVFEENPEVLNGSTSNGWDVSSNQ 1317
Query: 213 TKTNSNEWSAWGKNKSEIQVDVA------------------------ARDQGDTEQNNDW 106
T++ +NEWS W + + + + A DQ T ++N+W
Sbjct: 1318 TQSKTNEWSGWASSNKDGRSETAQENSWGKTVNQEDSSKSNAWNTSTTADQTKT-KSNEW 1376
Query: 105 SDWRKNKDEIQDGRPEQAHDNSWRAQKRKTDVT 7
SDW NK EI G + ++S ++ T T
Sbjct: 1377 SDWGSNKSEIPAGGSKAVQEDSSKSNAWNTSTT 1409
Score = 68.9 bits (167), Expect = 1e-09
Identities = 39/101 (38%), Positives = 52/101 (51%), Gaps = 16/101 (15%)
Frame = -2
Query: 255 NGSTSNGWDANS--DQTKTNSNEWSAWGKNKSEIQVDVAARDQGDTE------------- 121
+ S SN W+ ++ DQTKT SNEWSAWG NKSEI + Q D+
Sbjct: 1529 DSSKSNAWNTSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSSKAWNTSTTADQTK 1588
Query: 120 -QNNDWSDWRKNKDEIQDGRPEQAHDNSWRAQKRKTDVTPE 1
++N+WS NK EI G + ++SW + K K DV E
Sbjct: 1589 TKSNEWSARVSNKSEIPAGGSKAVQEDSWGSSKWKADVAQE 1629
Score = 64.7 bits (156), Expect = 2e-08
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 18/153 (11%)
Frame = -2
Query: 405 KGLNNGEEENNACXXXXXXXXXXXENVDWGMSPQHASEFDAVFEENFELLNGSTSNGWDA 226
K + ++NA ++ +W + SE A + + + S SN W+
Sbjct: 1392 KAVQEDSSKSNAWNTSTTSNQTKTKSKEWSAWGSNKSEIPACGSKAVQE-DSSKSNTWNT 1450
Query: 225 NS--DQTKTNSNEWSAWGKNKSEIQVDVAARDQGDTE----------------QNNDWSD 100
++ DQTKT SNEWSAWG NKSEI + Q D+ ++N+WS
Sbjct: 1451 STTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSSKSNAWNRSTTADQTKTKSNEWSA 1510
Query: 99 WRKNKDEIQDGRPEQAHDNSWRAQKRKTDVTPE 1
W NK EI G + ++S ++ T T +
Sbjct: 1511 WGSNKSEIPAGGSKAVQEDSSKSNAWNTSTTAD 1543
Score = 57.4 bits (137), Expect = 3e-06
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 30/137 (21%)
Frame = -2
Query: 321 WGMSPQH--ASEFDAVFEENFELLNGSTSNGWDANSDQTKTNSNEWSAWGKNKSEI---- 160
WG + A AV E++ + N ST+ +DQTKT SNEWSA NKSEI
Sbjct: 1555 WGSNKSEIPAGGSKAVQEDSSKAWNTSTT------ADQTKTKSNEWSARVSNKSEIPAGG 1608
Query: 159 --------------QVDVAARDQG----------DTEQNNDWSDWRKNKDEIQDGRPEQA 52
+ DVA D D ++N+WS W K KD Q+ +
Sbjct: 1609 SKAVQEDSWGSSKWKADVAQEDNSRLGAWDANAADQTKSNEWSGWGKKKDVTQEDNVQ-- 1666
Query: 51 HDNSWRAQKRKTDVTPE 1
+SW + KRK VT E
Sbjct: 1667 --HSWGSGKRKDKVTQE 1681
>ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine max]
Length = 2098
Score = 321 bits (823), Expect = 9e-86
Identities = 168/278 (60%), Positives = 197/278 (70%), Gaps = 39/278 (14%)
Frame = -2
Query: 753 MVAKGVLREHLLLLGSSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPRKCFERA 574
MVAKGVLREHL+LL SSMTCGGNLVGFN GGYKAL+RQLNIQVPFTDATLFTP+KCFERA
Sbjct: 1154 MVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTPKKCFERA 1213
Query: 573 AEKCHADSLSSIVASCSWGKHVAVGTGSRFDVVWNSKEITSNDIEGMDVYNFLHMVKGLN 394
AEKCH DSLSSIVASCSWGKHVAVGTGS+FDVVW++ EI SN+IEGMDVY+FLHMVK
Sbjct: 1214 AEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEGMDVYSFLHMVKSFT 1273
Query: 393 NGEEENNACXXXXXXXXXXXENVDWGMSPQHASEFDAVFEENFELLNGSTSNGWDANSDQ 214
NGEEE +AC E +D GMSPQH S F+AVFEEN E+LNGSTSNGWD +S+Q
Sbjct: 1274 NGEEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEAVFEENPEVLNGSTSNGWDVSSNQ 1333
Query: 213 TKTNSNEWSAW-GKNKSEI---QVDVAAR-------DQGDTEQNNDWS------------ 103
++ +NEWS W NK+EI + ++A + +Q D+ ++N WS
Sbjct: 1334 GESKTNEWSGWASSNKAEIKDGRSEIAPKNSWGKTVNQEDSSKSNPWSTSTIADQTKTKS 1393
Query: 102 -DW---------------RKNKDEIQDGRPEQAHDNSW 37
+W NK EI+DGR E A +NSW
Sbjct: 1394 NEWSAWGSNKSEIPVGWASSNKTEIKDGRSETAQENSW 1431
Score = 63.2 bits (152), Expect = 6e-08
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Frame = -2
Query: 255 NGSTSNGWDANSDQTKTNSNEWSAWGKNKSEIQVDVAA-----RDQGDTEQNNDWSDWRK 91
+ S WDAN++ +T SNEWS WGK K Q D + + D ++N+WSDW K
Sbjct: 1663 DNSRFGAWDANAED-QTKSNEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSNEWSDWGK 1721
Query: 90 NKDEIQDGRPEQAHDNSWRAQKRKTDVTPE 1
K+ Q+ + +SW + KRK VT E
Sbjct: 1722 KKEVTQEDNVQ----DSWGSGKRKDKVTQE 1747
Score = 63.2 bits (152), Expect = 6e-08
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Frame = -2
Query: 255 NGSTSNGWDAN-SDQTKTNSNEWSAWGKNKSEIQVDVAARDQG----------DTEQNND 109
+ S S GW AN +D K+ S+EWS+WGKNKSEI + Q DT++ N
Sbjct: 1748 DNSGSGGWGANRTDLAKSKSSEWSSWGKNKSEIPAGGSENVQNDSWGSGKLEDDTQKENS 1807
Query: 108 WSDWRKNKDEIQDGRPEQAHDNSWRAQKRKTD 13
S W +NK E DG E+ +++W + K +
Sbjct: 1808 GSAWVRNKAETIDGGSEKPQEDAWNSGNWKAE 1839
Score = 59.7 bits (143), Expect = 6e-07
Identities = 38/101 (37%), Positives = 48/101 (47%), Gaps = 16/101 (15%)
Frame = -2
Query: 255 NGSTSNGWDANS-DQTKTNSNEWSAWGKNKSEIQVD---VAARDQGDTEQ--NNDWSDWR 94
+ S WDAN+ DQTK SNEWS WGK K Q D + A D +Q +N+WS W
Sbjct: 1597 DNSRLGAWDANTADQTK--SNEWSGWGKKKEVTQEDNSRLGAWDANTADQTKSNEWSGWG 1654
Query: 93 KNKDEIQD----------GRPEQAHDNSWRAQKRKTDVTPE 1
K K+ Q+ +Q N W +K DVT E
Sbjct: 1655 KKKEVTQEDNSRFGAWDANAEDQTKSNEWSGWGKKKDVTQE 1695
Score = 56.6 bits (135), Expect = 5e-06
Identities = 38/112 (33%), Positives = 48/112 (42%), Gaps = 27/112 (24%)
Frame = -2
Query: 255 NGSTSNGWDANS-DQTKTNSNEWSAWGKNKSEIQVDVAARDQGD-------TEQNN---- 112
+ S WDAN+ DQTK SNEWS WGK K Q D G T+++N
Sbjct: 1696 DNSRLGAWDANAADQTK--SNEWSDWGKKKEVTQEDNVQDSWGSGKRKDKVTQEDNSGSG 1753
Query: 111 ---------------DWSDWRKNKDEIQDGRPEQAHDNSWRAQKRKTDVTPE 1
+WS W KNK EI G E ++SW + K + D E
Sbjct: 1754 GWGANRTDLAKSKSSEWSSWGKNKSEIPAGGSENVQNDSWGSGKLEDDTQKE 1805
Score = 56.2 bits (134), Expect = 7e-06
Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 16/101 (15%)
Frame = -2
Query: 255 NGSTSNGWDANS-DQTKTNSNEWSAWGKNKSEIQVD---VAARDQGDTEQ--NNDWSDWR 94
+ S WDAN+ DQTK S+EWS WGK K Q D + A D +Q +N+WS W
Sbjct: 1564 DNSRLGAWDANAADQTK--SSEWSGWGKKKDVTQEDNSRLGAWDANTADQTKSNEWSGWG 1621
Query: 93 KNKDEIQD----------GRPEQAHDNSWRAQKRKTDVTPE 1
K K+ Q+ +Q N W +K +VT E
Sbjct: 1622 KKKEVTQEDNSRLGAWDANTADQTKSNEWSGWGKKKEVTQE 1662
>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
subunit [Medicago truncatula]
Length = 2032
Score = 308 bits (790), Expect = 6e-82
Identities = 161/254 (63%), Positives = 182/254 (71%), Gaps = 29/254 (11%)
Frame = -2
Query: 753 MVAKGVLREHLLLLGSSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLF--------- 601
MVAKGVLREHL+LL SSMTCGGNLVGFNTGGYK LARQL+IQVPFTDATLF
Sbjct: 1213 MVAKGVLREHLILLASSMTCGGNLVGFNTGGYKTLARQLDIQVPFTDATLFVSALVISKL 1272
Query: 600 -----------------TPRKCFERAAEKCHADSLSSIVASCSWGKHVAVGTGSRFDVVW 472
TPRKCFERAAEK H+DSLSSIVASCSWGKHVAVGTGS+FD+VW
Sbjct: 1273 QDVFCYYFSYFVNVIMQTPRKCFERAAEKHHSDSLSSIVASCSWGKHVAVGTGSKFDIVW 1332
Query: 471 NSKEITSNDIEGMDVYNFLHMVKGLNNGEEENNACXXXXXXXXXXXENVDWGMSPQHASE 292
+ KEI +N+IEGM+VY FL+MVKGL NGEEE NAC EN D+ MSPQHAS
Sbjct: 1333 DPKEIKTNEIEGMNVYKFLNMVKGLANGEEETNACLGEDIDDLFDDENGDFDMSPQHASG 1392
Query: 291 FDAVFEENFELLNGSTSNGWDANS---DQTKTNSNEWSAWGKNKSEIQVDVAARDQGDTE 121
FDAVF+E FEL NGSTSNGWD+N DQ TNSN+WS WG NKS++QVDV Q D+
Sbjct: 1393 FDAVFDETFELPNGSTSNGWDSNKDQIDQPNTNSNDWSGWGPNKSDLQVDVI---QEDSS 1449
Query: 120 QNNDWSDWRKNKDE 79
+++ W K +
Sbjct: 1450 KSSAWGAATNQKSD 1463
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 239 bits (609), Expect = 6e-61
Identities = 125/259 (48%), Positives = 173/259 (66%), Gaps = 15/259 (5%)
Frame = -2
Query: 753 MVAKGVLREHLLLLGSSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPRKCFERA 574
MVAKGVL+EHL+LL +SMTC GNL+GFN+GGYKAL+R LN+QVPFT+ATLFTPRKCFE+A
Sbjct: 1201 MVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKA 1260
Query: 573 AEKCHADSLSSIVASCSWGKHVAVGTGSRFDVVWNSKEITSNDIEGMDVYNFLHMVKGLN 394
+EKCH DSLSSIVASCSWGKHV VGTGSRFDV+W++KEI G+D+Y+FLH+V+ +
Sbjct: 1261 SEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGS 1320
Query: 393 NGEEENNAC-XXXXXXXXXXXENVDWGMSPQHASEFD-AVFEENFELLN------GSTSN 238
G+E + AC EN++ GMSP+H+S F+ VFE++ E N +
Sbjct: 1321 YGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWENHVPGSGG 1380
Query: 237 GWDANSDQTKTNS----NEWSAWGKNKSEIQVDVAARDQGDTEQNNDWSD---WRKNKDE 79
W N ++ T S + WS+WG +K ++ + R+ ++ ++ W D W D+
Sbjct: 1381 DWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGWDDKGTW--GTDK 1438
Query: 78 IQDGRPEQAHDNSWRAQKR 22
Q+ + H++S R+ R
Sbjct: 1439 AQNTAFRRTHEDSPRSSGR 1457
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 239 bits (609), Expect = 6e-61
Identities = 125/259 (48%), Positives = 173/259 (66%), Gaps = 15/259 (5%)
Frame = -2
Query: 753 MVAKGVLREHLLLLGSSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPRKCFERA 574
MVAKGVL+EHL+LL +SMTC GNL+GFN+GGYKAL+R LN+QVPFT+ATLFTPRKCFE+A
Sbjct: 1141 MVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKA 1200
Query: 573 AEKCHADSLSSIVASCSWGKHVAVGTGSRFDVVWNSKEITSNDIEGMDVYNFLHMVKGLN 394
+EKCH DSLSSIVASCSWGKHV VGTGSRFDV+W++KEI G+D+Y+FLH+V+ +
Sbjct: 1201 SEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGS 1260
Query: 393 NGEEENNAC-XXXXXXXXXXXENVDWGMSPQHASEFD-AVFEENFELLN------GSTSN 238
G+E + AC EN++ GMSP+H+S F+ VFE++ E N +
Sbjct: 1261 YGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWENHVPGSGG 1320
Query: 237 GWDANSDQTKTNS----NEWSAWGKNKSEIQVDVAARDQGDTEQNNDWSD---WRKNKDE 79
W N ++ T S + WS+WG +K ++ + R+ ++ ++ W D W D+
Sbjct: 1321 DWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGWDDKGTW--GTDK 1378
Query: 78 IQDGRPEQAHDNSWRAQKR 22
Q+ + H++S R+ R
Sbjct: 1379 AQNTAFRRTHEDSPRSSGR 1397