BLASTX nr result
ID: Glycyrrhiza23_contig00029510
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00029510
(414 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003622500.1| Pentatricopeptide repeat-containing protein ... 228 4e-58
ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containi... 219 2e-55
ref|XP_003548452.1| PREDICTED: pentatricopeptide repeat-containi... 215 3e-54
ref|XP_002320145.1| predicted protein [Populus trichocarpa] gi|2... 150 8e-35
emb|CBI40438.3| unnamed protein product [Vitis vinifera] 145 4e-33
>ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497515|gb|AES78718.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 655
Score = 228 bits (581), Expect = 4e-58
Identities = 109/137 (79%), Positives = 123/137 (89%)
Frame = -2
Query: 413 HLIKFGFCQVLSLQNQILSVYLRCKEIEDAEKLFEELPGRNVVSWNIMIRGIVGCDNGND 234
HLIKFGFCQVLSLQNQILSVYL+C+E EDA+KLFEELP RNVVSWNIMIR VG ++ N+
Sbjct: 85 HLIKFGFCQVLSLQNQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASVGRNDENE 144
Query: 233 SNPPQLCFSYFKRMLLEMVVPDDITFNGVIGLCVQFHDIGMGIQLHCFTVKVGFDLDCFV 54
S+ +LCFSYF+RMLLEM+VPD ITFNG+I LC QF+DI MG+QLHCFTVKVGFDLDCFV
Sbjct: 145 SSGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFV 204
Query: 53 GCALVDLYAKCGLVESA 3
GCALV LYAKCG VE+A
Sbjct: 205 GCALVGLYAKCGFVENA 221
Score = 73.6 bits (179), Expect = 2e-11
Identities = 41/136 (30%), Positives = 72/136 (52%)
Frame = -2
Query: 410 LIKFGFCQVLSLQNQILSVYLRCKEIEDAEKLFEELPGRNVVSWNIMIRGIVGCDNGNDS 231
+++ F + + + ++++Y + + I DA ++F+E+ RNVV+WN MI G +GN+
Sbjct: 296 VLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSIRNVVAWNTMIVGFGNHGDGNE- 354
Query: 230 NPPQLCFSYFKRMLLEMVVPDDITFNGVIGLCVQFHDIGMGIQLHCFTVKVGFDLDCFVG 51
K ML E +PD++T + +I C I +Q+H F VK+ V
Sbjct: 355 -----VMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQVHAFAVKLSCQDFLSVA 409
Query: 50 CALVDLYAKCGLVESA 3
+L+ Y+KCG + SA
Sbjct: 410 NSLISAYSKCGSITSA 425
Score = 63.5 bits (153), Expect = 2e-08
Identities = 36/132 (27%), Positives = 72/132 (54%), Gaps = 4/132 (3%)
Frame = -2
Query: 407 IKFGFCQVLSLQNQILSVYLRCKEIEDAEKLFEELPGRNVVSWNIMIRGIVGCDNGNDSN 228
+K GF + ++ +Y +C +E+A ++F ++ R++V WN+M+ V ++
Sbjct: 194 VKVGFDLDCFVGCALVGLYAKCGFVENARRVFCDVSCRDLVMWNVMVSCYV------FNS 247
Query: 227 PPQLCFSYFKRMLLEMVVPDDITFNGVIGL----CVQFHDIGMGIQLHCFTVKVGFDLDC 60
P+ F F M L++V D+ TF+ ++ + ++++D G Q+H ++ FD D
Sbjct: 248 LPEEAFRVFNSMRLDVVNGDEFTFSSLLSVISDDALEYYDFGK--QVHSLVLRQSFDSDV 305
Query: 59 FVGCALVDLYAK 24
V AL+++YAK
Sbjct: 306 LVASALINMYAK 317
>ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial-like [Glycine max]
Length = 644
Score = 219 bits (558), Expect = 2e-55
Identities = 107/139 (76%), Positives = 117/139 (84%), Gaps = 2/139 (1%)
Frame = -2
Query: 413 HLIKFGFCQVLSLQNQILSVYLRCKEIEDAEKLFEELPGRNVVSWNIMIRGIVGCD--NG 240
HLIKFGFC VLSLQNQIL VYL+C E +DAEKLFEEL RNVVSWNI+IRGIVGC N
Sbjct: 75 HLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSVRNVVSWNILIRGIVGCGDANE 134
Query: 239 NDSNPPQLCFSYFKRMLLEMVVPDDITFNGVIGLCVQFHDIGMGIQLHCFTVKVGFDLDC 60
NDSN Q CFSYFKRMLLE+VVPD TFNG+ G+CV+FHDI MG QLHCF VK+G DLDC
Sbjct: 135 NDSNQQQ-CFSYFKRMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVKLGLDLDC 193
Query: 59 FVGCALVDLYAKCGLVESA 3
FVG LVDLYA+CGLVE+A
Sbjct: 194 FVGSVLVDLYAQCGLVENA 212
Score = 74.7 bits (182), Expect = 7e-12
Identities = 42/137 (30%), Positives = 69/137 (50%)
Frame = -2
Query: 413 HLIKFGFCQVLSLQNQILSVYLRCKEIEDAEKLFEELPGRNVVSWNIMIRGIVGCDNGND 234
H+++ F + + + ++++Y + + I DA +LF+ + RNVV+WN +I G GN+
Sbjct: 284 HILRLSFDSDVLVASALINMYAKNENIVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNE 343
Query: 233 SNPPQLCFSYFKRMLLEMVVPDDITFNGVIGLCVQFHDIGMGIQLHCFTVKVGFDLDCFV 54
+ ML E PD++T + I LC I +Q H F VK F V
Sbjct: 344 ------VMKLLREMLREGFSPDELTISSTISLCGYVSAITETMQAHAFAVKSSFQEFLSV 397
Query: 53 GCALVDLYAKCGLVESA 3
+L+ Y+KCG + SA
Sbjct: 398 ANSLISAYSKCGSITSA 414
Score = 58.5 bits (140), Expect = 5e-07
Identities = 35/128 (27%), Positives = 64/128 (50%)
Frame = -2
Query: 407 IKFGFCQVLSLQNQILSVYLRCKEIEDAEKLFEELPGRNVVSWNIMIRGIVGCDNGNDSN 228
+K G + + ++ +Y +C +E+A ++F + R++V WN+MI C N
Sbjct: 185 VKLGLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLVVWNVMI----SCYALNCL- 239
Query: 227 PPQLCFSYFKRMLLEMVVPDDITFNGVIGLCVQFHDIGMGIQLHCFTVKVGFDLDCFVGC 48
P+ F F M + D+ TF+ ++ +C G Q+H +++ FD D V
Sbjct: 240 -PEEAFVMFNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDSDVLVAS 298
Query: 47 ALVDLYAK 24
AL+++YAK
Sbjct: 299 ALINMYAK 306
>ref|XP_003548452.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial-like [Glycine max]
Length = 578
Score = 215 bits (547), Expect = 3e-54
Identities = 107/139 (76%), Positives = 114/139 (82%), Gaps = 2/139 (1%)
Frame = -2
Query: 413 HLIKFGFCQVLSLQNQILSVYLRCKEIEDAEKLFEELPGRNVVSWNIMIRGIVGCDNG-- 240
HLIKFGFC VLSLQNQIL VYL+C E ED EKLF+ELP RNVVSWNI+I GIVGC N
Sbjct: 75 HLIKFGFCHVLSLQNQILGVYLKCMEAEDVEKLFKELPLRNVVSWNILIHGIVGCGNAIE 134
Query: 239 NDSNPPQLCFSYFKRMLLEMVVPDDITFNGVIGLCVQFHDIGMGIQLHCFTVKVGFDLDC 60
N SN QLCFSYFKRMLLE VVPD TFNG+IG+CV+FHDI MG QLHCF VK G DLDC
Sbjct: 135 NYSNR-QLCFSYFKRMLLETVVPDGTTFNGLIGVCVKFHDIAMGFQLHCFAVKFGLDLDC 193
Query: 59 FVGCALVDLYAKCGLVESA 3
FV LVDLYAKCGLVE+A
Sbjct: 194 FVESVLVDLYAKCGLVENA 212
Score = 71.2 bits (173), Expect = 8e-11
Identities = 41/136 (30%), Positives = 67/136 (49%)
Frame = -2
Query: 410 LIKFGFCQVLSLQNQILSVYLRCKEIEDAEKLFEELPGRNVVSWNIMIRGIVGCDNGNDS 231
+++ F + + + ++++Y + + I DA LF+ + RNVV+WN +I G C GND
Sbjct: 285 ILRQSFDSDVLVASALINMYAKNENIIDACNLFDRMVIRNVVAWNTIIVGCGNCGEGND- 343
Query: 230 NPPQLCFSYFKRMLLEMVVPDDITFNGVIGLCVQFHDIGMGIQLHCFTVKVGFDLDCFVG 51
+ ML E PD++T +I C I ++ H F VK F V
Sbjct: 344 -----VMKLLREMLREGFFPDELTITSIISSCGYASAITETMEAHVFVVKSSFQEFSSVA 398
Query: 50 CALVDLYAKCGLVESA 3
+L+ Y+KCG + SA
Sbjct: 399 NSLISAYSKCGSITSA 414
Score = 67.8 bits (164), Expect = 9e-10
Identities = 38/128 (29%), Positives = 66/128 (51%)
Frame = -2
Query: 407 IKFGFCQVLSLQNQILSVYLRCKEIEDAEKLFEELPGRNVVSWNIMIRGIVGCDNGNDSN 228
+KFG +++ ++ +Y +C +E+A++ F +P R++V WN+MI C N
Sbjct: 185 VKFGLDLDCFVESVLVDLYAKCGLVENAKRAFHVVPRRDLVMWNVMI----SCYALNWL- 239
Query: 227 PPQLCFSYFKRMLLEMVVPDDITFNGVIGLCVQFHDIGMGIQLHCFTVKVGFDLDCFVGC 48
P+ F F M L D+ TF+ ++ +C G Q+H ++ FD D V
Sbjct: 240 -PEEAFGMFNLMRLGGANGDEFTFSSLLSICDTLEYYDFGKQVHSIILRQSFDSDVLVAS 298
Query: 47 ALVDLYAK 24
AL+++YAK
Sbjct: 299 ALINMYAK 306
>ref|XP_002320145.1| predicted protein [Populus trichocarpa] gi|222860918|gb|EEE98460.1|
predicted protein [Populus trichocarpa]
Length = 548
Score = 150 bits (380), Expect = 8e-35
Identities = 70/137 (51%), Positives = 99/137 (72%)
Frame = -2
Query: 413 HLIKFGFCQVLSLQNQILSVYLRCKEIEDAEKLFEELPGRNVVSWNIMIRGIVGCDNGND 234
H+IK GFC VLSLQNQIL+VY++CK+ A +LF+E+ RNVV+WN +I G+V C +
Sbjct: 13 HVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVICGLVDCRGSDY 72
Query: 233 SNPPQLCFSYFKRMLLEMVVPDDITFNGVIGLCVQFHDIGMGIQLHCFTVKVGFDLDCFV 54
+ + F YF++MLL+ V D IT NG++ C++ +D+ +G +LHCF VK+GF ++ FV
Sbjct: 73 ESSVYMGFCYFRKMLLDKVGFDAITLNGLLRACLELNDVEIGRELHCFIVKLGFAVNSFV 132
Query: 53 GCALVDLYAKCGLVESA 3
ALVDLY KCGLV+ A
Sbjct: 133 NSALVDLYGKCGLVKEA 149
Score = 70.9 bits (172), Expect = 1e-10
Identities = 37/136 (27%), Positives = 71/136 (52%)
Frame = -2
Query: 410 LIKFGFCQVLSLQNQILSVYLRCKEIEDAEKLFEELPGRNVVSWNIMIRGIVGCDNGNDS 231
++K GF + + ++ +Y +C +++A + F+E+ R++V WN+M+ ++
Sbjct: 121 IVKLGFAVNSFVNSALVDLYGKCGLVKEARRAFDEVYCRDLVLWNVMLSCYAMNCLAEEA 180
Query: 230 NPPQLCFSYFKRMLLEMVVPDDITFNGVIGLCVQFHDIGMGIQLHCFTVKVGFDLDCFVG 51
+ +FK M E + D TF+ ++ C +G Q+H ++K+ FDLD V
Sbjct: 181 S------GFFKLMQEENFMTDGFTFSSMLNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVA 234
Query: 50 CALVDLYAKCGLVESA 3
LVD+YAK ++ A
Sbjct: 235 SGLVDMYAKSENIDDA 250
Score = 58.2 bits (139), Expect = 7e-07
Identities = 37/135 (27%), Positives = 65/135 (48%)
Frame = -2
Query: 407 IKFGFCQVLSLQNQILSVYLRCKEIEDAEKLFEELPGRNVVSWNIMIRGIVGCDNGNDSN 228
IK F + + + ++ +Y + + I+DA K F+ + RNVVSWN M+ G +G ++
Sbjct: 223 IKLSFDLDVLVASGLVDMYAKSENIDDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEA- 281
Query: 227 PPQLCFSYFKRMLLEMVVPDDITFNGVIGLCVQFHDIGMGIQLHCFTVKVGFDLDCFVGC 48
M E + PD+IT +I C +Q++ + +K GF +
Sbjct: 282 -----MKLLIGMFQEDLRPDEITLASIIRSCSSALTSCEIMQVNAYVLKNGFHAFLSIAN 336
Query: 47 ALVDLYAKCGLVESA 3
AL++ Y+K G + A
Sbjct: 337 ALINAYSKGGSIAMA 351
>emb|CBI40438.3| unnamed protein product [Vitis vinifera]
Length = 1079
Score = 145 bits (365), Expect = 4e-33
Identities = 72/138 (52%), Positives = 99/138 (71%), Gaps = 1/138 (0%)
Frame = -2
Query: 413 HLIKFGFCQVLSLQNQILSVYLRCKEIEDAEKLFEELPGRNVVSWNIMIRGIVGCDNGND 234
H+IK G C +LSLQNQ+L VY++CKE D K+F+E+P +NVVSWN +I G+V GN
Sbjct: 98 HVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVV---EGNC 154
Query: 233 SNP-PQLCFSYFKRMLLEMVVPDDITFNGVIGLCVQFHDIGMGIQLHCFTVKVGFDLDCF 57
+L F YF++M+LEM+ P+ IT NG++ ++ +D+G+ QLHCF +K GFD +CF
Sbjct: 155 KFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCF 214
Query: 56 VGCALVDLYAKCGLVESA 3
VG ALVD YAK GLV+ A
Sbjct: 215 VGSALVDSYAKFGLVDEA 232
Score = 62.4 bits (150), Expect = 4e-08
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Frame = -2
Query: 410 LIKFGFCQVLSLQNQILSVYLRCKEIEDAEKLFEELPGRNVVSWNIMI-----RGIVGCD 246
++K GF + + ++ Y + +++A+ F+E+ R++V WN+M+ G+ G
Sbjct: 204 ILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQG-- 261
Query: 245 NGNDSNPPQLCFSYFKRMLLEMVVPDDITFNGVIGLCVQFHDIGMGIQLHCFTVKVGFDL 66
F FK M LE V D+ TF +I C G+G Q+H +++ FDL
Sbjct: 262 ---------KAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDL 312
Query: 65 DCFVGCAL 42
D V AL
Sbjct: 313 DVLVASAL 320