BLASTX nr result

ID: Glycyrrhiza23_contig00029294 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00029294
         (820 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003517934.1| PREDICTED: chromodomain-helicase-DNA-binding...   283   2e-74
ref|XP_002326828.1| chromatin remodeling complex subunit [Populu...   245   8e-63
ref|XP_004166129.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain...   238   1e-60
ref|XP_004140512.1| PREDICTED: chromodomain-helicase-DNA-binding...   238   1e-60
ref|XP_002274161.2| PREDICTED: chromodomain-helicase-DNA-binding...   233   4e-59

>ref|XP_003517934.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Glycine
            max]
          Length = 1482

 Score =  283 bits (725), Expect = 2e-74
 Identities = 145/180 (80%), Positives = 155/180 (86%)
 Frame = -2

Query: 819  ISPPDGDIISATGSVHFVYGDCTAPSNGSSSEPAIIFSCVDTSGHWGHGGMFDALAKLST 640
            ISP   DI SA+GSVHFVYGDCTAPSN  SSEPAIIFSCVDTSGHWGHGGMFDAL+KLST
Sbjct: 1297 ISPTGNDIASASGSVHFVYGDCTAPSNVCSSEPAIIFSCVDTSGHWGHGGMFDALSKLST 1356

Query: 639  SISDAYERASEXXXXXXXXXXLIRLEDGCNEKNMDGNAPKMVALAVVQSYNPRRKVPRSE 460
            SI DAY+ ASE          LIRL+D C E+ MDGNAPKMVALAVVQSYNPR K+ RSE
Sbjct: 1357 SIGDAYQWASEHGDLHLGDLHLIRLDDCCGEQ-MDGNAPKMVALAVVQSYNPRHKIRRSE 1415

Query: 459  ISLVHLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSQWYTIERLLRKYASIYNINIFV 280
            ISL HLES L+KAA+SAAQNSASIHMPRIGYQDGSDRS+WYTIERLLRKYASIYNINI+V
Sbjct: 1416 ISLPHLESSLTKAAYSAAQNSASIHMPRIGYQDGSDRSEWYTIERLLRKYASIYNINIYV 1475


>ref|XP_002326828.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222835143|gb|EEE73578.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 866

 Score =  245 bits (626), Expect = 8e-63
 Identities = 120/180 (66%), Positives = 145/180 (80%)
 Frame = -2

Query: 819  ISPPDGDIISATGSVHFVYGDCTAPSNGSSSEPAIIFSCVDTSGHWGHGGMFDALAKLST 640
            I P DGD +S +G VHFV GDCT P    SSEP++IFSCVD SG+WGHGGMFDALAKLS+
Sbjct: 687  IYPVDGDALSDSGFVHFVVGDCTHPDKLCSSEPSVIFSCVDESGNWGHGGMFDALAKLSS 746

Query: 639  SISDAYERASEXXXXXXXXXXLIRLEDGCNEKNMDGNAPKMVALAVVQSYNPRRKVPRSE 460
            SI  AY++ASE          L+++ +  + +NM+G+ P+ VALAVVQSYNPRRKVPRSE
Sbjct: 747  SIPAAYQQASEFRDLHLGDVHLVKIIENTDGQNMEGDTPRWVALAVVQSYNPRRKVPRSE 806

Query: 459  ISLVHLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSQWYTIERLLRKYASIYNINIFV 280
            IS+  LE+CLSKA+F+AAQNSASIHMPRIGYQDG+DRSQWYT+ERLLRKYAS++ I I V
Sbjct: 807  ISIPDLEACLSKASFAAAQNSASIHMPRIGYQDGTDRSQWYTVERLLRKYASVFGIKIHV 866


>ref|XP_004166129.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 1-like [Cucumis sativus]
          Length = 867

 Score =  238 bits (607), Expect = 1e-60
 Identities = 124/182 (68%), Positives = 142/182 (78%), Gaps = 2/182 (1%)
 Frame = -2

Query: 819  ISPPDGDIISATGSVHFVYGDCTAPSNGSS--SEPAIIFSCVDTSGHWGHGGMFDALAKL 646
            I P DGD+IS  GSV+FVYGDCT PS   +  SEP IIFSCVD SG WGHGGMF ALAKL
Sbjct: 679  ILPNDGDLISDAGSVYFVYGDCTHPSATVNCISEPTIIFSCVDDSGSWGHGGMFGALAKL 738

Query: 645  STSISDAYERASEXXXXXXXXXXLIRLEDGCNEKNMDGNAPKMVALAVVQSYNPRRKVPR 466
            S S+  AYERASE          LI+L     E++   NAP+ VALAVVQSYNPRRKVPR
Sbjct: 739  SESVPSAYERASEFGDLHLGDLHLIKLGIISKEQSTSDNAPQWVALAVVQSYNPRRKVPR 798

Query: 465  SEISLVHLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSQWYTIERLLRKYASIYNINI 286
            S+ISL  LE+C+SKA+ SAA++SASIHMPRIGYQDGSDRS+WYT+ERLLRKYASIYN+ I
Sbjct: 799  SKISLPDLENCISKASSSAAKHSASIHMPRIGYQDGSDRSEWYTVERLLRKYASIYNVKI 858

Query: 285  FV 280
            +V
Sbjct: 859  YV 860


>ref|XP_004140512.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Cucumis
            sativus]
          Length = 868

 Score =  238 bits (607), Expect = 1e-60
 Identities = 124/182 (68%), Positives = 142/182 (78%), Gaps = 2/182 (1%)
 Frame = -2

Query: 819  ISPPDGDIISATGSVHFVYGDCTAPSNGSS--SEPAIIFSCVDTSGHWGHGGMFDALAKL 646
            I P DGD+IS  GSV+FVYGDCT PS   +  SEP IIFSCVD SG WGHGGMF ALAKL
Sbjct: 680  ILPNDGDLISDAGSVYFVYGDCTHPSATVNCISEPTIIFSCVDDSGSWGHGGMFGALAKL 739

Query: 645  STSISDAYERASEXXXXXXXXXXLIRLEDGCNEKNMDGNAPKMVALAVVQSYNPRRKVPR 466
            S S+  AYERASE          LI+L     E++   NAP+ VALAVVQSYNPRRKVPR
Sbjct: 740  SESVPSAYERASEFGDLHLGDLHLIKLGIISKEQSTSDNAPQWVALAVVQSYNPRRKVPR 799

Query: 465  SEISLVHLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSQWYTIERLLRKYASIYNINI 286
            S+ISL  LE+C+SKA+ SAA++SASIHMPRIGYQDGSDRS+WYT+ERLLRKYASIYN+ I
Sbjct: 800  SKISLPDLENCISKASSSAAKHSASIHMPRIGYQDGSDRSEWYTVERLLRKYASIYNVKI 859

Query: 285  FV 280
            +V
Sbjct: 860  YV 861


>ref|XP_002274161.2| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Vitis
            vinifera]
          Length = 876

 Score =  233 bits (594), Expect = 4e-59
 Identities = 118/176 (67%), Positives = 135/176 (76%)
 Frame = -2

Query: 807  DGDIISATGSVHFVYGDCTAPSNGSSSEPAIIFSCVDTSGHWGHGGMFDALAKLSTSISD 628
            D D+IS +GSV FVYGDCT PS    SE  IIFSC+D SG WGHGGMFDALA+LS+S+ D
Sbjct: 697  DVDMISDSGSVDFVYGDCTLPSKVCPSEATIIFSCIDDSGIWGHGGMFDALARLSSSVPD 756

Query: 627  AYERASEXXXXXXXXXXLIRLEDGCNEKNMDGNAPKMVALAVVQSYNPRRKVPRSEISLV 448
            AY+RASE           I++ + C E+ MD NAP+ VALAVVQSYNPRRKVPRS IS+ 
Sbjct: 757  AYQRASEFKDLHLGDLHFIKINEDCEEQRMDCNAPQWVALAVVQSYNPRRKVPRSNISVP 816

Query: 447  HLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSQWYTIERLLRKYASIYNINIFV 280
             LE CLSKA+F AAQ SASIHMPRIGYQ   DRS+WYT+ERLLRKYAS+Y I IFV
Sbjct: 817  DLECCLSKASFLAAQKSASIHMPRIGYQ---DRSEWYTVERLLRKYASLYGIKIFV 869


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