BLASTX nr result

ID: Glycyrrhiza23_contig00029084 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00029084
         (778 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003517934.1| PREDICTED: chromodomain-helicase-DNA-binding...   369   e-100
ref|XP_002326828.1| chromatin remodeling complex subunit [Populu...   326   3e-87
ref|XP_002326827.1| hypothetical protein POPTRDRAFT_781297 [Popu...   326   3e-87
ref|XP_002274161.2| PREDICTED: chromodomain-helicase-DNA-binding...   312   5e-83
emb|CBI16626.3| unnamed protein product [Vitis vinifera]              312   5e-83

>ref|XP_003517934.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Glycine
            max]
          Length = 1482

 Score =  369 bits (948), Expect = e-100
 Identities = 198/259 (76%), Positives = 206/259 (79%)
 Frame = +2

Query: 2    MPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTMDQFLSTFRDISDLSSVHDSPKVNERL 181
            MPRRLLMTGTPIQNNLSELWALMYFCMPSVFGT DQFLS F+DISDLS VHD+PKV ERL
Sbjct: 804  MPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTPDQFLSMFKDISDLSPVHDTPKVKERL 863

Query: 182  QILRSVLGAFMLRRTKSKLMECGNXXXXXXXXXXXXXXXXXXQKKVYMSILRKELPKLLA 361
            +ILRSVLGAFMLRRTKSKL+ECGN                  QKKVYMSILRKEL KLLA
Sbjct: 864  KILRSVLGAFMLRRTKSKLIECGNLVLPPLTVTTVLVPLVILQKKVYMSILRKELHKLLA 923

Query: 362  LSSGSGTSNHTSLQNIVIQLRKACSHPYLFXXXXXXXXXXXXHLVQASGKLVILDKLLQK 541
            LS G  TSNH SLQNIVIQLRKACSHPYLF            HLVQASGKL+ILD+LLQK
Sbjct: 924  LSFG--TSNHESLQNIVIQLRKACSHPYLFPGIESEPYEEGEHLVQASGKLLILDQLLQK 981

Query: 542  LHHSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEEXXXXXXXXXXXXXNMGL 721
            LH+SGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEE             NMGL
Sbjct: 982  LHYSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSANMGL 1041

Query: 722  NSEADQNGAFVFMISTRAG 778
            NSEADQN AFVF+ISTRAG
Sbjct: 1042 NSEADQNEAFVFIISTRAG 1060


>ref|XP_002326828.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222835143|gb|EEE73578.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 866

 Score =  326 bits (836), Expect = 3e-87
 Identities = 173/259 (66%), Positives = 195/259 (75%)
 Frame = +2

Query: 2   MPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTMDQFLSTFRDISDLSSVHDSPKVNERL 181
           MPRRLLMTGTPIQNNL+ELWALM+FCMP VFGT+DQFLSTFR+ +D SS HD+ KV  + 
Sbjct: 195 MPRRLLMTGTPIQNNLTELWALMHFCMPLVFGTLDQFLSTFREAADASSDHDATKVKRQF 254

Query: 182 QILRSVLGAFMLRRTKSKLMECGNXXXXXXXXXXXXXXXXXXQKKVYMSILRKELPKLLA 361
           + L+S+L +FMLRRTKS+L+ECGN                  QKKVY SILRKELPKLLA
Sbjct: 255 KTLKSILKSFMLRRTKSRLIECGNLVLPSLTEITVMAPLVSLQKKVYTSILRKELPKLLA 314

Query: 362 LSSGSGTSNHTSLQNIVIQLRKACSHPYLFXXXXXXXXXXXXHLVQASGKLVILDKLLQK 541
           LSS +  SNH SLQN+VIQLRKACSHPYLF            HLV+ASGKL+ILD+LL+K
Sbjct: 315 LSSSA--SNHQSLQNMVIQLRKACSHPYLFPGIEPEPYEEGEHLVKASGKLIILDQLLEK 372

Query: 542 LHHSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEEXXXXXXXXXXXXXNMGL 721
           LH SGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGS+RAEE               G 
Sbjct: 373 LHDSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSVRAEERFAAIRSFSGQSGRSG- 431

Query: 722 NSEADQNGAFVFMISTRAG 778
            SE+DQN +FVFMISTRAG
Sbjct: 432 -SESDQNSSFVFMISTRAG 449


>ref|XP_002326827.1| hypothetical protein POPTRDRAFT_781297 [Populus trichocarpa]
           gi|222835142|gb|EEE73577.1| hypothetical protein
           POPTRDRAFT_781297 [Populus trichocarpa]
          Length = 485

 Score =  326 bits (836), Expect = 3e-87
 Identities = 173/259 (66%), Positives = 195/259 (75%)
 Frame = +2

Query: 2   MPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTMDQFLSTFRDISDLSSVHDSPKVNERL 181
           MPRRLLMTGTPIQNNL+ELWALM+FCMP VFGT+DQFLSTFR+ +D SS HD+ KV  + 
Sbjct: 204 MPRRLLMTGTPIQNNLTELWALMHFCMPLVFGTLDQFLSTFREAADASSDHDATKVKRQF 263

Query: 182 QILRSVLGAFMLRRTKSKLMECGNXXXXXXXXXXXXXXXXXXQKKVYMSILRKELPKLLA 361
           + L+S+L +FMLRRTKS+L+ECGN                  QKKVY SILRKELPKLLA
Sbjct: 264 KTLKSILKSFMLRRTKSRLIECGNLVLPSLTEITVMAPLVSLQKKVYTSILRKELPKLLA 323

Query: 362 LSSGSGTSNHTSLQNIVIQLRKACSHPYLFXXXXXXXXXXXXHLVQASGKLVILDKLLQK 541
           LSS +  SNH SLQN+VIQLRKACSHPYLF            HLV+ASGKL+ILD+LL+K
Sbjct: 324 LSSSA--SNHQSLQNMVIQLRKACSHPYLFPGIEPEPYEEGEHLVKASGKLIILDQLLEK 381

Query: 542 LHHSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEEXXXXXXXXXXXXXNMGL 721
           LH SGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGS+RAEE               G 
Sbjct: 382 LHDSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSVRAEERFAAIRSFSGQSGRSG- 440

Query: 722 NSEADQNGAFVFMISTRAG 778
            SE+DQN +FVFMISTRAG
Sbjct: 441 -SESDQNSSFVFMISTRAG 458


>ref|XP_002274161.2| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Vitis
           vinifera]
          Length = 876

 Score =  312 bits (800), Expect = 5e-83
 Identities = 167/259 (64%), Positives = 189/259 (72%)
 Frame = +2

Query: 2   MPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTMDQFLSTFRDISDLSSVHDSPKVNERL 181
           MPRRLLMTGTPIQNNL+ELWALM+FCMPS+FGT++QFLSTF++    SS     +V ++ 
Sbjct: 199 MPRRLLMTGTPIQNNLTELWALMHFCMPSIFGTLEQFLSTFKEDGHPSSGEKVAEVKDQF 258

Query: 182 QILRSVLGAFMLRRTKSKLMECGNXXXXXXXXXXXXXXXXXXQKKVYMSILRKELPKLLA 361
           + L+ +LGAFMLRR KSKL+ECG                   QKKVYMSILRKELPKLLA
Sbjct: 259 RTLKYILGAFMLRRMKSKLIECGTLVLPPLTEITVMAPLVSLQKKVYMSILRKELPKLLA 318

Query: 362 LSSGSGTSNHTSLQNIVIQLRKACSHPYLFXXXXXXXXXXXXHLVQASGKLVILDKLLQK 541
            SSG   S H SLQNIVIQLRKACSHPYLF            HLVQASGKL+ILD+LLQK
Sbjct: 319 FSSGP--SGHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLIILDQLLQK 376

Query: 542 LHHSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEEXXXXXXXXXXXXXNMGL 721
           L++SGHRVLLFAQMTHTLDILQDF+ELRKYSYERLDGS+RAEE                L
Sbjct: 377 LYNSGHRVLLFAQMTHTLDILQDFMELRKYSYERLDGSVRAEERFSAIRSFSRQIVEGSL 436

Query: 722 NSEADQNGAFVFMISTRAG 778
           NS+  Q+ AFVFMISTRAG
Sbjct: 437 NSQDVQSSAFVFMISTRAG 455


>emb|CBI16626.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  312 bits (800), Expect = 5e-83
 Identities = 167/259 (64%), Positives = 189/259 (72%)
 Frame = +2

Query: 2   MPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTMDQFLSTFRDISDLSSVHDSPKVNERL 181
           MPRRLLMTGTPIQNNL+ELWALM+FCMPS+FGT++QFLSTF++    SS     +V ++ 
Sbjct: 198 MPRRLLMTGTPIQNNLTELWALMHFCMPSIFGTLEQFLSTFKEDGHPSSGEKVAEVKDQF 257

Query: 182 QILRSVLGAFMLRRTKSKLMECGNXXXXXXXXXXXXXXXXXXQKKVYMSILRKELPKLLA 361
           + L+ +LGAFMLRR KSKL+ECG                   QKKVYMSILRKELPKLLA
Sbjct: 258 RTLKYILGAFMLRRMKSKLIECGTLVLPPLTEITVMAPLVSLQKKVYMSILRKELPKLLA 317

Query: 362 LSSGSGTSNHTSLQNIVIQLRKACSHPYLFXXXXXXXXXXXXHLVQASGKLVILDKLLQK 541
            SSG   S H SLQNIVIQLRKACSHPYLF            HLVQASGKL+ILD+LLQK
Sbjct: 318 FSSGP--SGHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLIILDQLLQK 375

Query: 542 LHHSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEEXXXXXXXXXXXXXNMGL 721
           L++SGHRVLLFAQMTHTLDILQDF+ELRKYSYERLDGS+RAEE                L
Sbjct: 376 LYNSGHRVLLFAQMTHTLDILQDFMELRKYSYERLDGSVRAEERFSAIRSFSRQIVEGSL 435

Query: 722 NSEADQNGAFVFMISTRAG 778
           NS+  Q+ AFVFMISTRAG
Sbjct: 436 NSQDVQSSAFVFMISTRAG 454


Top