BLASTX nr result
ID: Glycyrrhiza23_contig00029056
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00029056
(460 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003609609.1| Pentatricopeptide repeat-containing protein ... 265 4e-69
ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containi... 254 4e-66
ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containi... 223 1e-56
emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera] 221 6e-56
ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containi... 214 6e-54
>ref|XP_003609609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510664|gb|AES91806.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 576
Score = 265 bits (676), Expect = 4e-69
Identities = 125/152 (82%), Positives = 141/152 (92%)
Frame = +2
Query: 5 QRFFDDIPRKDVISWNSMISGYAKAGNVDQACYLFQQMPERSLVSWNTMITGYIDCGSMV 184
QRFFD+IP KDVISWN M+SGYAKAG +D+ACYLFQQMPER+ SWNTMITGY+DCGS+V
Sbjct: 190 QRFFDEIPLKDVISWNCMVSGYAKAGKMDRACYLFQQMPERNFASWNTMITGYVDCGSIV 249
Query: 185 SARDVFDSMPKRNSVSLITMIAGYSKSGDVDSARELFDQMDEKGLLSYNAMIACYAQNSK 364
AR++FD+MP+RNSVSLITMIAGYSKSGDV SARELFDQMD+K LLSYNAMIACYAQ+SK
Sbjct: 250 EARELFDAMPRRNSVSLITMIAGYSKSGDVHSARELFDQMDDKDLLSYNAMIACYAQSSK 309
Query: 365 PKEALELFNDMLKPDISVHPDKITLTSVISAC 460
PKEAL+LFN MLKPD S+HPDK+TL SVISAC
Sbjct: 310 PKEALDLFNVMLKPDSSLHPDKMTLASVISAC 341
Score = 77.8 bits (190), Expect = 8e-13
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 41/193 (21%)
Frame = +2
Query: 2 AQRFFDDIPRKDVISWNSMISGYAKAGNVDQACYLFQQMPERSLVSWNTMITGYIDCGSM 181
A+ FD +PR++ +S +MI+GY+K+G+V A LF QM ++ L+S+N MI Y
Sbjct: 251 ARELFDAMPRRNSVSLITMIAGYSKSGDVHSARELFDQMDDKDLLSYNAMIACYAQSSKP 310
Query: 182 VSARDVFDSMPKRNS------VSLITMIAG------------------------------ 253
A D+F+ M K +S ++L ++I+
Sbjct: 311 KEALDLFNVMLKPDSSLHPDKMTLASVISACSQLGNLEHWRWIESQINNFGIVLDDHLAT 370
Query: 254 -----YSKSGDVDSARELFDQMDEKGLLSYNAMIACYAQNSKPKEALELFNDMLKPDISV 418
Y+K G +D A ELF + ++ +++Y+AMI N + +A+ELF M +
Sbjct: 371 ALIDLYAKCGSIDKAYELFHGLRKRDVVAYSAMIYGCGINGRASDAVELFERMAGE--CI 428
Query: 419 HPDKITLTSVISA 457
P+ +T T +++A
Sbjct: 429 IPNLVTYTGILTA 441
>ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Glycine max]
Length = 576
Score = 254 bits (650), Expect = 4e-66
Identities = 125/153 (81%), Positives = 135/153 (88%)
Frame = +2
Query: 2 AQRFFDDIPRKDVISWNSMISGYAKAGNVDQACYLFQQMPERSLVSWNTMITGYIDCGSM 181
AQ F +IP KDVISWNSMISGYAKAGNV QAC LFQ+MPER+L SWN MI G+IDCGS+
Sbjct: 189 AQYLFSEIPGKDVISWNSMISGYAKAGNVGQACTLFQRMPERNLSSWNAMIAGFIDCGSL 248
Query: 182 VSARDVFDSMPKRNSVSLITMIAGYSKSGDVDSARELFDQMDEKGLLSYNAMIACYAQNS 361
VSAR+ FD+MP+RN VS ITMIAGYSK GDVDSAR+LFDQMD K LLSYNAMIACYAQNS
Sbjct: 249 VSAREFFDTMPRRNCVSWITMIAGYSKGGDVDSARKLFDQMDHKDLLSYNAMIACYAQNS 308
Query: 362 KPKEALELFNDMLKPDISVHPDKITLTSVISAC 460
KPKEALELFNDMLK DI VHPDK+TL SVISAC
Sbjct: 309 KPKEALELFNDMLKQDIYVHPDKMTLASVISAC 341
Score = 90.5 bits (223), Expect = 1e-16
Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 41/193 (21%)
Frame = +2
Query: 2 AQRFFDDIPRKDVISWNSMISGYAKAGNVDQACYLFQQMPERSLVSWNTMITGYIDCGSM 181
A+ FFD +PR++ +SW +MI+GY+K G+VD A LF QM + L+S+N MI Y
Sbjct: 251 AREFFDTMPRRNCVSWITMIAGYSKGGDVDSARKLFDQMDHKDLLSYNAMIACYAQNSKP 310
Query: 182 VSARDVFDSMPKRN------SVSLITMIAG------------------------------ 253
A ++F+ M K++ ++L ++I+
Sbjct: 311 KEALELFNDMLKQDIYVHPDKMTLASVISACSQLGDLEHWWWIESHMNDFGIVLDDHLAT 370
Query: 254 -----YSKSGDVDSARELFDQMDEKGLLSYNAMIACYAQNSKPKEALELFNDMLKPDISV 418
Y+K G +D A ELF + ++ L++Y+AMI N K +A++LF ML I
Sbjct: 371 ALIDLYAKCGSIDKAYELFHNLRKRDLVAYSAMIYGCGINGKASDAIKLFEQMLAECIG- 429
Query: 419 HPDKITLTSVISA 457
P+ +T T +++A
Sbjct: 430 -PNLVTYTGLLTA 441
Score = 61.2 bits (147), Expect = 8e-08
Identities = 31/85 (36%), Positives = 54/85 (63%)
Frame = +2
Query: 161 YIDCGSMVSARDVFDSMPKRNSVSLITMIAGYSKSGDVDSARELFDQMDEKGLLSYNAMI 340
Y G M +AR VFD M ++ VS ++++GY K+G++D A+ LF ++ K ++S+N+MI
Sbjct: 149 YSKIGDMGTARKVFDEMANKSVVSWNSLLSGYVKAGNLDEAQYLFSEIPGKDVISWNSMI 208
Query: 341 ACYAQNSKPKEALELFNDMLKPDIS 415
+ YA+ +A LF M + ++S
Sbjct: 209 SGYAKAGNVGQACTLFQRMPERNLS 233
>ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
gi|296083555|emb|CBI23551.3| unnamed protein product
[Vitis vinifera]
Length = 580
Score = 223 bits (568), Expect = 1e-56
Identities = 106/153 (69%), Positives = 132/153 (86%)
Frame = +2
Query: 2 AQRFFDDIPRKDVISWNSMISGYAKAGNVDQACYLFQQMPERSLVSWNTMITGYIDCGSM 181
AQR FD+IP+KDVISWNSMISGYA+AG++++A LFQQMPER+ SWN MI+GY++ G +
Sbjct: 193 AQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDI 252
Query: 182 VSARDVFDSMPKRNSVSLITMIAGYSKSGDVDSARELFDQMDEKGLLSYNAMIACYAQNS 361
SAR FD+MP+RN+VS +TMI+GYSK GDVDSA ELFDQ+ K LL +NAMIACYAQNS
Sbjct: 253 DSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNS 312
Query: 362 KPKEALELFNDMLKPDISVHPDKITLTSVISAC 460
+PKEAL+LFN+ML PD++V PD++TL SVISAC
Sbjct: 313 RPKEALKLFNNMLNPDVNVQPDEMTLASVISAC 345
Score = 96.7 bits (239), Expect = 2e-18
Identities = 44/115 (38%), Positives = 76/115 (66%)
Frame = +2
Query: 53 SMISGYAKAGNVDQACYLFQQMPERSLVSWNTMITGYIDCGSMVSARDVFDSMPKRNSVS 232
+++ Y K G+++ A +F +M ER++VSWN+M+ GY+ G +V A+ VFD +P+++ +S
Sbjct: 148 ALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVIS 207
Query: 233 LITMIAGYSKSGDVDSARELFDQMDEKGLLSYNAMIACYAQNSKPKEALELFNDM 397
+MI+GY+++GD++ A LF QM E+ S+NAMI+ Y + A F+ M
Sbjct: 208 WNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAM 262
Score = 86.3 bits (212), Expect = 2e-15
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 41/193 (21%)
Frame = +2
Query: 2 AQRFFDDIPRKDVISWNSMISGYAKAGNVDQACYLFQQMPERSLVSWNTMITGYIDCGSM 181
A+ FFD +P+++ +SW +MISGY+K G+VD AC LF Q+ + L+ +N MI Y
Sbjct: 255 ARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRP 314
Query: 182 VSARDVFDSM------PKRNSVSLITMIAG------------------------------ 253
A +F++M + + ++L ++I+
Sbjct: 315 KEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLAT 374
Query: 254 -----YSKSGDVDSARELFDQMDEKGLLSYNAMIACYAQNSKPKEALELFNDMLKPDISV 418
Y+K G +D A ELF + +K L++Y AMI N K +A++LF++M+ D +
Sbjct: 375 ALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMV--DAQI 432
Query: 419 HPDKITLTSVISA 457
P+ IT +++A
Sbjct: 433 FPNSITFIGLLTA 445
>emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
Length = 841
Score = 221 bits (562), Expect = 6e-56
Identities = 105/153 (68%), Positives = 131/153 (85%)
Frame = +2
Query: 2 AQRFFDDIPRKDVISWNSMISGYAKAGNVDQACYLFQQMPERSLVSWNTMITGYIDCGSM 181
AQR FD+IP+KDVISWNSMISGYA+AG++++A LFQQMPER+ SWN MI+GY++ G +
Sbjct: 189 AQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDI 248
Query: 182 VSARDVFDSMPKRNSVSLITMIAGYSKSGDVDSARELFDQMDEKGLLSYNAMIACYAQNS 361
SAR FD+MP+ N+VS +TMI+GYSK GDVDSA ELFDQ+ K LL +NAMIACYAQNS
Sbjct: 249 DSARSFFDAMPQXNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNS 308
Query: 362 KPKEALELFNDMLKPDISVHPDKITLTSVISAC 460
+PKEAL+LFN+ML PD++V PD++TL SVISAC
Sbjct: 309 RPKEALKLFNNMLNPDVNVQPDEMTLASVISAC 341
Score = 96.7 bits (239), Expect = 2e-18
Identities = 44/115 (38%), Positives = 76/115 (66%)
Frame = +2
Query: 53 SMISGYAKAGNVDQACYLFQQMPERSLVSWNTMITGYIDCGSMVSARDVFDSMPKRNSVS 232
+++ Y K G+++ A +F +M ER++VSWN+M+ GY+ G +V A+ VFD +P+++ +S
Sbjct: 144 ALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVIS 203
Query: 233 LITMIAGYSKSGDVDSARELFDQMDEKGLLSYNAMIACYAQNSKPKEALELFNDM 397
+MI+GY+++GD++ A LF QM E+ S+NAMI+ Y + A F+ M
Sbjct: 204 WNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAM 258
Score = 84.3 bits (207), Expect = 9e-15
Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 41/193 (21%)
Frame = +2
Query: 2 AQRFFDDIPRKDVISWNSMISGYAKAGNVDQACYLFQQMPERSLVSWNTMITGYIDCGSM 181
A+ FFD +P+ + +SW +MISGY+K G+VD AC LF Q+ + L+ +N MI Y
Sbjct: 251 ARSFFDAMPQXNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRP 310
Query: 182 VSARDVFDSM------PKRNSVSLITMIAG------------------------------ 253
A +F++M + + ++L ++I+
Sbjct: 311 KEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLAT 370
Query: 254 -----YSKSGDVDSARELFDQMDEKGLLSYNAMIACYAQNSKPKEALELFNDMLKPDISV 418
Y+K G +D A ELF + +K L++Y AMI N K +A++LF++M+ D +
Sbjct: 371 ALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMV--DAQI 428
Query: 419 HPDKITLTSVISA 457
P+ IT +++A
Sbjct: 429 FPNLITFIGLLTA 441
>ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
Length = 580
Score = 214 bits (545), Expect = 6e-54
Identities = 102/153 (66%), Positives = 129/153 (84%)
Frame = +2
Query: 2 AQRFFDDIPRKDVISWNSMISGYAKAGNVDQACYLFQQMPERSLVSWNTMITGYIDCGSM 181
AQR FD+IP+KDVISWNSMISGYA+AG++++A LFQQMPER+ SWN MI+G+++ G +
Sbjct: 193 AQRVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDI 252
Query: 182 VSARDVFDSMPKRNSVSLITMIAGYSKSGDVDSARELFDQMDEKGLLSYNAMIACYAQNS 361
SAR FD+MP++N+VS +TMI+GYSK GDVDSA ELFDQ+ K LL +NAMIACYAQNS
Sbjct: 253 DSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNS 312
Query: 362 KPKEALELFNDMLKPDISVHPDKITLTSVISAC 460
+P EAL LFN+ML P ++V PD++TL SVISAC
Sbjct: 313 RPNEALNLFNNMLNPYVNVQPDEMTLASVISAC 345
Score = 95.1 bits (235), Expect = 5e-18
Identities = 43/115 (37%), Positives = 76/115 (66%)
Frame = +2
Query: 53 SMISGYAKAGNVDQACYLFQQMPERSLVSWNTMITGYIDCGSMVSARDVFDSMPKRNSVS 232
+++ Y K G+++ A +F +M ER++VSWN+M+ GY+ G +V A+ VFD +P+++ +S
Sbjct: 148 ALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVIS 207
Query: 233 LITMIAGYSKSGDVDSARELFDQMDEKGLLSYNAMIACYAQNSKPKEALELFNDM 397
+MI+GY+++GD++ A LF QM E+ S+NAMI+ + + A F+ M
Sbjct: 208 WNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAM 262
Score = 87.8 bits (216), Expect = 8e-16
Identities = 57/193 (29%), Positives = 97/193 (50%), Gaps = 41/193 (21%)
Frame = +2
Query: 2 AQRFFDDIPRKDVISWNSMISGYAKAGNVDQACYLFQQMPERSLVSWNTMITGYIDCGSM 181
A+ FFD +P+K+ +SW +MISGY+K G+VD AC LF Q+ + L+ +N MI Y
Sbjct: 255 ARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRP 314
Query: 182 VSARDVFDSM------PKRNSVSLITMIAG------------------------------ 253
A ++F++M + + ++L ++I+
Sbjct: 315 NEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLAT 374
Query: 254 -----YSKSGDVDSARELFDQMDEKGLLSYNAMIACYAQNSKPKEALELFNDMLKPDISV 418
Y+K G +D A ELF + +K L++Y AMI N K +A++LF++M+ D +
Sbjct: 375 ALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMV--DAQI 432
Query: 419 HPDKITLTSVISA 457
P+ IT +++A
Sbjct: 433 FPNSITFIGLLTA 445