BLASTX nr result

ID: Glycyrrhiza23_contig00028660 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00028660
         (420 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containi...   228   3e-58
ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containi...   224   7e-57
emb|CBI15662.3| unnamed protein product [Vitis vinifera]              218   3e-55
ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containi...   218   3e-55
emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]   218   3e-55

>ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  228 bits (582), Expect = 3e-58
 Identities = 109/138 (78%), Positives = 119/138 (86%)
 Frame = +3

Query: 3   NVFDRMHRKNVISWNALIAGYGNHGQGEEAIEMFEQMLRERMVPNHVTFLAVLSACSYSG 182
           +VF+RM RKNVISWNALIAGYGNHGQGEEA+EMFEQMLRE M+PNHVTFLAVLSACSYSG
Sbjct: 375 HVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSG 434

Query: 183 LSERGWEIFQSMHRDHWVKPRAMHYSCIIXXXXXXXXXXXAFALIRSAPFEPTPNMWAAL 362
           LSERGWEIF SM RDH VKPRAMHY+C++           A+ LIRSAPF+PT NMWA L
Sbjct: 435 LSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPTTNMWATL 494

Query: 363 LTACRMHKNLELGKLAAE 416
           LTACRMH+NLELGKLAAE
Sbjct: 495 LTACRMHENLELGKLAAE 512


>ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  224 bits (570), Expect = 7e-57
 Identities = 107/139 (76%), Positives = 119/139 (85%)
 Frame = +3

Query: 3   NVFDRMHRKNVISWNALIAGYGNHGQGEEAIEMFEQMLRERMVPNHVTFLAVLSACSYSG 182
           +VF+RM  KNVISWNALIAGYGNHGQG+EA+EMFEQML+E + P HVTFLAVLSACSYSG
Sbjct: 376 HVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSG 435

Query: 183 LSERGWEIFQSMHRDHWVKPRAMHYSCIIXXXXXXXXXXXAFALIRSAPFEPTPNMWAAL 362
           LS+RGWEIF SM RDH VKPRAMHY+C+I           A+ALIR+APF+PT NMWAAL
Sbjct: 436 LSQRGWEIFYSMKRDHKVKPRAMHYACMIELLGRESLLDEAYALIRTAPFKPTANMWAAL 495

Query: 363 LTACRMHKNLELGKLAAEK 419
           LTACRMHKNLELGKLAAEK
Sbjct: 496 LTACRMHKNLELGKLAAEK 514


>emb|CBI15662.3| unnamed protein product [Vitis vinifera]
          Length = 657

 Score =  218 bits (556), Expect = 3e-55
 Identities = 104/139 (74%), Positives = 116/139 (83%)
 Frame = +3

Query: 3   NVFDRMHRKNVISWNALIAGYGNHGQGEEAIEMFEQMLRERMVPNHVTFLAVLSACSYSG 182
           +VFD M  KNVISWNALIAGYGNHG+G EA+EMFE+ML E MVPNHVTFLAVLSACSYSG
Sbjct: 389 HVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSG 448

Query: 183 LSERGWEIFQSMHRDHWVKPRAMHYSCIIXXXXXXXXXXXAFALIRSAPFEPTPNMWAAL 362
           LS+RGWEIF+SM RDH +KPRAMHY+C+I           AFALI+ APF+PT NMWAAL
Sbjct: 449 LSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAAL 508

Query: 363 LTACRMHKNLELGKLAAEK 419
           LTACR+HKN ELGK AAEK
Sbjct: 509 LTACRVHKNFELGKFAAEK 527


>ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  218 bits (556), Expect = 3e-55
 Identities = 104/139 (74%), Positives = 116/139 (83%)
 Frame = +3

Query: 3   NVFDRMHRKNVISWNALIAGYGNHGQGEEAIEMFEQMLRERMVPNHVTFLAVLSACSYSG 182
           +VFD M  KNVISWNALIAGYGNHG+G EA+EMFE+ML E MVPNHVTFLAVLSACSYSG
Sbjct: 389 HVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSG 448

Query: 183 LSERGWEIFQSMHRDHWVKPRAMHYSCIIXXXXXXXXXXXAFALIRSAPFEPTPNMWAAL 362
           LS+RGWEIF+SM RDH +KPRAMHY+C+I           AFALI+ APF+PT NMWAAL
Sbjct: 449 LSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAAL 508

Query: 363 LTACRMHKNLELGKLAAEK 419
           LTACR+HKN ELGK AAEK
Sbjct: 509 LTACRVHKNFELGKFAAEK 527


>emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  218 bits (556), Expect = 3e-55
 Identities = 104/139 (74%), Positives = 116/139 (83%)
 Frame = +3

Query: 3   NVFDRMHRKNVISWNALIAGYGNHGQGEEAIEMFEQMLRERMVPNHVTFLAVLSACSYSG 182
           +VFD M  KNVISWNALIAGYGNHG+G EA+EMFE+ML E MVPNHVTFLAVLSACSYSG
Sbjct: 389 HVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSG 448

Query: 183 LSERGWEIFQSMHRDHWVKPRAMHYSCIIXXXXXXXXXXXAFALIRSAPFEPTPNMWAAL 362
           LS+RGWEIF+SM RDH +KPRAMHY+C+I           AFALI+ APF+PT NMWAAL
Sbjct: 449 LSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAAL 508

Query: 363 LTACRMHKNLELGKLAAEK 419
           LTACR+HKN ELGK AAEK
Sbjct: 509 LTACRVHKNFELGKFAAEK 527


Top