BLASTX nr result

ID: Glycyrrhiza23_contig00028568 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00028568
         (318 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003535660.1| PREDICTED: transcription regulatory protein ...   159   3e-37
ref|XP_003592449.1| Chromatin remodeling complex subunit [Medica...   147   9e-34
ref|XP_003555334.1| PREDICTED: transcription regulatory protein ...   144   1e-32
ref|XP_003610678.1| Chromatin remodeling complex subunit [Medica...   119   2e-25
gb|AFK39819.1| unknown [Lotus japonicus]                              114   8e-24

>ref|XP_003535660.1| PREDICTED: transcription regulatory protein SNF2-like [Glycine max]
          Length = 1072

 Score =  159 bits (401), Expect = 3e-37
 Identities = 82/106 (77%), Positives = 92/106 (86%)
 Frame = +1

Query: 1    RREYLSSDSIAQASDNTGAEENLLERRTESARMANERTSEEDSFHVTPASKRFKPEGTNF 180
            RR++ SSDS+AQASDNTGAEE+L E RTES  M NERTSE DSFHVTP +KRFKPEGTNF
Sbjct: 965  RRDHRSSDSVAQASDNTGAEESL-ELRTESVPMENERTSE-DSFHVTPPAKRFKPEGTNF 1022

Query: 181  QKHAYEDVRGSGLNQHVLSWNTHRKKRSSYPGHGSLSDTRGQNSNG 318
             KH YEDV GSGLN+H+LSWNTH+KKRSS+ G GSLSDTRG +SNG
Sbjct: 1023 LKHTYEDV-GSGLNRHLLSWNTHKKKRSSFLGQGSLSDTRGHSSNG 1067


>ref|XP_003592449.1| Chromatin remodeling complex subunit [Medicago truncatula]
            gi|355481497|gb|AES62700.1| Chromatin remodeling complex
            subunit [Medicago truncatula]
          Length = 1083

 Score =  147 bits (371), Expect = 9e-34
 Identities = 72/105 (68%), Positives = 88/105 (83%)
 Frame = +1

Query: 4    REYLSSDSIAQASDNTGAEENLLERRTESARMANERTSEEDSFHVTPASKRFKPEGTNFQ 183
            R++LSSDSIAQASD+TGA+E++L+ R +     N+RT E DSFHVTP+SKRFKPEGTNFQ
Sbjct: 975  RDHLSSDSIAQASDDTGADESILQSRAKIVPTENDRTWE-DSFHVTPSSKRFKPEGTNFQ 1033

Query: 184  KHAYEDVRGSGLNQHVLSWNTHRKKRSSYPGHGSLSDTRGQNSNG 318
            KHA+EDV GSGL+Q V SWN H+KKRSS+ G GS S++RG NSNG
Sbjct: 1034 KHAHEDVSGSGLDQPVFSWNIHKKKRSSHLGQGSASESRGHNSNG 1078


>ref|XP_003555334.1| PREDICTED: transcription regulatory protein SNF2-like [Glycine max]
          Length = 1073

 Score =  144 bits (362), Expect = 1e-32
 Identities = 78/106 (73%), Positives = 88/106 (83%)
 Frame = +1

Query: 1    RREYLSSDSIAQASDNTGAEENLLERRTESARMANERTSEEDSFHVTPASKRFKPEGTNF 180
            RR++ SSDSIAQASDNTGAEE+L E +TES  M NERTSE DSFHVTP +KRF PEGT F
Sbjct: 967  RRDHHSSDSIAQASDNTGAEESL-ELKTESVPMENERTSE-DSFHVTPPAKRFNPEGT-F 1023

Query: 181  QKHAYEDVRGSGLNQHVLSWNTHRKKRSSYPGHGSLSDTRGQNSNG 318
             K  YEDV GSGLN H+LSWNTH+KKRSS+ G GSLS+TRG +SNG
Sbjct: 1024 LKQTYEDV-GSGLNHHLLSWNTHKKKRSSFLGQGSLSETRGHSSNG 1068


>ref|XP_003610678.1| Chromatin remodeling complex subunit [Medicago truncatula]
            gi|355512013|gb|AES93636.1| Chromatin remodeling complex
            subunit [Medicago truncatula]
          Length = 1063

 Score =  119 bits (299), Expect = 2e-25
 Identities = 67/106 (63%), Positives = 76/106 (71%)
 Frame = +1

Query: 1    RREYLSSDSIAQASDNTGAEENLLERRTESARMANERTSEEDSFHVTPASKRFKPEGTNF 180
            R+  L  DS AQ SD+TGAEE LLE    S  MANER S ED+F+ TPASKRFK E  + 
Sbjct: 958  RKIRLPIDSHAQTSDDTGAEERLLEL---SNTMANER-SNEDTFYGTPASKRFKHEEVSS 1013

Query: 181  QKHAYEDVRGSGLNQHVLSWNTHRKKRSSYPGHGSLSDTRGQNSNG 318
             KH  +D   SGLN+HV SWNT RKKRSSYP  GSLSDT+GQ+SNG
Sbjct: 1014 HKHEIKDTGVSGLNEHVFSWNTIRKKRSSYPSQGSLSDTKGQSSNG 1059


>gb|AFK39819.1| unknown [Lotus japonicus]
          Length = 220

 Score =  114 bits (285), Expect = 8e-24
 Identities = 63/99 (63%), Positives = 70/99 (70%)
 Frame = +1

Query: 22  DSIAQASDNTGAEENLLERRTESARMANERTSEEDSFHVTPASKRFKPEGTNFQKHAYED 201
           DS AQASD+ GAEE LLE R  S R      S ED+F+VTPASKR K E  N Q H  ED
Sbjct: 123 DSDAQASDDIGAEERLLELRNGSER------SSEDTFNVTPASKRPKHEELNSQNHENED 176

Query: 202 VRGSGLNQHVLSWNTHRKKRSSYPGHGSLSDTRGQNSNG 318
           VR  GLN++V SWNT +KKRSSY   GSLSDT+GQNSNG
Sbjct: 177 VRVGGLNENVFSWNTKKKKRSSYLSQGSLSDTKGQNSNG 215


Top