BLASTX nr result

ID: Glycyrrhiza23_contig00028417 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00028417
         (638 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003602621.1| hypothetical protein MTR_3g096320 [Medicago ...    65   6e-13
ref|XP_003528049.1| PREDICTED: GDP-mannose transporter GONST1-li...    60   1e-11
ref|XP_002873393.1| hypothetical protein ARALYDRAFT_908877 [Arab...    55   3e-09
ref|NP_196493.1| presenilin enhancer 2 [Arabidopsis thaliana] gi...    52   2e-08
ref|XP_002306247.1| predicted protein [Populus trichocarpa] gi|2...    55   1e-07

>ref|XP_003602621.1| hypothetical protein MTR_3g096320 [Medicago truncatula]
           gi|355491669|gb|AES72872.1| hypothetical protein
           MTR_3g096320 [Medicago truncatula]
           gi|388491508|gb|AFK33820.1| unknown [Medicago
           truncatula]
          Length = 133

 Score = 64.7 bits (156), Expect(2) = 6e-13
 Identities = 35/50 (70%), Positives = 38/50 (76%), Gaps = 4/50 (8%)
 Frame = +2

Query: 341 MEASQSQSNNLNP----LASSVQVWRPIDGPLGVSE*ESV*YARRFYKFG 478
           ME+SQS +NN NP    LA SV VW  IDGPLG+SE ESV YARRFYKFG
Sbjct: 1   MESSQSHTNNPNPNPNPLALSVPVWPTIDGPLGLSEEESVKYARRFYKFG 50



 Score = 35.0 bits (79), Expect(2) = 6e-13
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 486 YFWPVLRHSHSFP 524
           YFWPV+RHSHSFP
Sbjct: 64  YFWPVIRHSHSFP 76


>ref|XP_003528049.1| PREDICTED: GDP-mannose transporter GONST1-like [Glycine max]
          Length = 449

 Score = 60.5 bits (145), Expect(2) = 1e-11
 Identities = 34/53 (64%), Positives = 36/53 (67%), Gaps = 7/53 (13%)
 Frame = +2

Query: 341 MEASQSQSNNLNP-------LASSVQVWRPIDGPLGVSE*ESV*YARRFYKFG 478
           MEASQ    N NP       +ASSV VW  IDGPLG+SE ESV YARRFYKFG
Sbjct: 314 MEASQGNHPNPNPNPNRNNSVASSVPVWPTIDGPLGLSEEESVGYARRFYKFG 366



 Score = 34.3 bits (77), Expect(2) = 1e-11
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +3

Query: 486 YFWPVLRHSHSFP 524
           YFWP LRHSHSFP
Sbjct: 380 YFWPALRHSHSFP 392


>ref|XP_002873393.1| hypothetical protein ARALYDRAFT_908877 [Arabidopsis lyrata subsp.
           lyrata] gi|297319230|gb|EFH49652.1| hypothetical protein
           ARALYDRAFT_908877 [Arabidopsis lyrata subsp. lyrata]
          Length = 146

 Score = 55.5 bits (132), Expect(2) = 3e-09
 Identities = 32/63 (50%), Positives = 36/63 (57%), Gaps = 17/63 (26%)
 Frame = +2

Query: 341 MEASQSQSNNLNPLA-----------------SSVQVWRPIDGPLGVSE*ESV*YARRFY 469
           MEAS+S   NLNP+                  SS QVW  IDGPLG++E  SV YARRFY
Sbjct: 1   MEASRSDDPNLNPIRNRNPNPTPAPNPLSTIISSAQVWPTIDGPLGLTEEASVDYARRFY 60

Query: 470 KFG 478
           KFG
Sbjct: 61  KFG 63



 Score = 31.6 bits (70), Expect(2) = 3e-09
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +3

Query: 486 YFWPVLRHSHSFP 524
           YFWPVLRHS +FP
Sbjct: 77  YFWPVLRHSRAFP 89


>ref|NP_196493.1| presenilin enhancer 2 [Arabidopsis thaliana]
           gi|37081813|sp|Q9FY84.1|PEN2_ARATH RecName:
           Full=Probable gamma-secretase subunit PEN-2
           gi|9955518|emb|CAC05457.1| putative protein [Arabidopsis
           thaliana] gi|21595672|gb|AAM66122.1| unknown
           [Arabidopsis thaliana] gi|26452353|dbj|BAC43262.1|
           unknown protein [Arabidopsis thaliana]
           gi|32189291|gb|AAP75800.1| At5g09310 [Arabidopsis
           thaliana] gi|332003990|gb|AED91373.1| presenilin
           enhancer 2 [Arabidopsis thaliana]
          Length = 146

 Score = 52.4 bits (124), Expect(2) = 2e-08
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 365 NNLNPLASSVQVWRPIDGPLGVSE*ESV*YARRFYKFG 478
           N L+ + SS QVW  IDGPLG++E  SV YARRFYKFG
Sbjct: 26  NPLSTIISSAQVWPTIDGPLGLTEEASVDYARRFYKFG 63



 Score = 31.6 bits (70), Expect(2) = 2e-08
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +3

Query: 486 YFWPVLRHSHSFP 524
           YFWPVLRHS +FP
Sbjct: 77  YFWPVLRHSRAFP 89


>ref|XP_002306247.1| predicted protein [Populus trichocarpa] gi|222855696|gb|EEE93243.1|
           predicted protein [Populus trichocarpa]
          Length = 140

 Score = 54.7 bits (130), Expect(2) = 1e-07
 Identities = 30/57 (52%), Positives = 35/57 (61%), Gaps = 11/57 (19%)
 Frame = +2

Query: 341 MEASQSQS-----------NNLNPLASSVQVWRPIDGPLGVSE*ESV*YARRFYKFG 478
           MEASQ  +           NN N + SS  VW  IDGPLG++E ES+ YARRFYKFG
Sbjct: 1   MEASQPNTTTDTANPNPIPNNTNSILSSTPVWPTIDGPLGLTEDESLTYARRFYKFG 57



 Score = 26.9 bits (58), Expect(2) = 1e-07
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 486 YFWPVLRHSHSFP 524
           YFWPVL +S SFP
Sbjct: 71  YFWPVLFNSRSFP 83


Top