BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00028241
         (279 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   164   5e-39
ref|XP_003538711.1| PREDICTED: DNA-directed RNA polymerase D sub...   160   8e-38
ref|XP_003516687.1| PREDICTED: DNA-directed RNA polymerase D sub...   155   3e-36
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   130   1e-28
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...   129   3e-28

>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1687

 Score =  164 bits (416), Expect = 5e-39
 Identities = 82/93 (88%), Positives = 87/93 (93%)
 Frame = +1

Query: 1    ATLSQASVDAFRHVFRNIQSLADKYAYKDNTFLAMFKAGSKGNLLKLVQHSMCLGLQHSL 180
            A  SQASVDAFRHVFRNIQSLADK+A KDN+FLAMFKAGSKGNLLKLVQHSMCLGLQHSL
Sbjct: 858  AAQSQASVDAFRHVFRNIQSLADKHACKDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHSL 917

Query: 181  VRLSYRIPRKLSCAAWNSQKGLDSVQMFSDTLE 279
            VRLSYRIPR+LSCA WNSQKGL S++M SDTLE
Sbjct: 918  VRLSYRIPRELSCAGWNSQKGLHSMEMSSDTLE 950


>ref|XP_003538711.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine
           max]
          Length = 1461

 Score =  160 bits (406), Expect = 8e-38
 Identities = 81/93 (87%), Positives = 85/93 (91%)
 Frame = +1

Query: 1   ATLSQASVDAFRHVFRNIQSLADKYAYKDNTFLAMFKAGSKGNLLKLVQHSMCLGLQHSL 180
           A LSQASVDAFR VFRNIQSLADKYA KDN FLAMFKAGSKGNLLKLVQHSMCLG+Q+SL
Sbjct: 699 AALSQASVDAFRQVFRNIQSLADKYACKDNAFLAMFKAGSKGNLLKLVQHSMCLGMQNSL 758

Query: 181 VRLSYRIPRKLSCAAWNSQKGLDSVQMFSDTLE 279
           VRLSYR+PR LSCAAWNSQK LDS+QM S TLE
Sbjct: 759 VRLSYRLPRHLSCAAWNSQKWLDSIQMSSGTLE 791


>ref|XP_003516687.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine
           max]
          Length = 1622

 Score =  155 bits (392), Expect = 3e-36
 Identities = 78/93 (83%), Positives = 85/93 (91%)
 Frame = +1

Query: 1   ATLSQASVDAFRHVFRNIQSLADKYAYKDNTFLAMFKAGSKGNLLKLVQHSMCLGLQHSL 180
           A+LSQASVDAFR VFRNIQSLADKYA K N+FLAMFKAGSKGNLLKLVQHSMCLG+Q+SL
Sbjct: 692 ASLSQASVDAFRQVFRNIQSLADKYACKGNSFLAMFKAGSKGNLLKLVQHSMCLGMQNSL 751

Query: 181 VRLSYRIPRKLSCAAWNSQKGLDSVQMFSDTLE 279
           VRLSYR+PR LSCA WNSQK +DS+QM S TLE
Sbjct: 752 VRLSYRLPRHLSCADWNSQKWVDSIQMSSGTLE 784


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 1517

 Score =  130 bits (327), Expect = 1e-28
 Identities = 64/86 (74%), Positives = 73/86 (84%)
 Frame = +1

Query: 1    ATLSQASVDAFRHVFRNIQSLADKYAYKDNTFLAMFKAGSKGNLLKLVQHSMCLGLQHSL 180
            A LSQ+SVDAFR VFR+IQSL  KYA +DN+FLAMFKAGSKGNLLKLVQHSMCLGLQH+L
Sbjct: 748  AALSQSSVDAFRLVFRDIQSLVYKYASQDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHAL 807

Query: 181  VRLSYRIPRKLSCAAWNSQKGLDSVQ 258
              LS+RIP +LSCA WN QK  D+ +
Sbjct: 808  ASLSFRIPHQLSCAGWNKQKADDATE 833


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 1475

 Score =  129 bits (323), Expect = 3e-28
 Identities = 62/86 (72%), Positives = 74/86 (86%)
 Frame = +1

Query: 1   ATLSQASVDAFRHVFRNIQSLADKYAYKDNTFLAMFKAGSKGNLLKLVQHSMCLGLQHSL 180
           A LSQASVDAF+HVFR+IQ+L  KYA KDN  +AMFK+GSKGNLLK+VQHSMCLGLQHSL
Sbjct: 699 AALSQASVDAFKHVFRDIQTLGYKYASKDNALMAMFKSGSKGNLLKVVQHSMCLGLQHSL 758

Query: 181 VRLSYRIPRKLSCAAWNSQKGLDSVQ 258
           V LS+R+P +LSC AWN QK  ++V+
Sbjct: 759 VPLSFRMPLQLSCDAWNKQKAENAVE 784