BLASTX nr result

ID: Glycyrrhiza23_contig00028006 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00028006
         (444 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003548949.1| PREDICTED: 5'-3' exonuclease-like [Glycine max]   106   2e-21
ref|XP_004138652.1| PREDICTED: 5'-3' exonuclease-like [Cucumis s...    76   3e-12
ref|XP_002327332.1| predicted protein [Populus trichocarpa] gi|2...    75   6e-12
gb|ABK93472.1| unknown [Populus trichocarpa]                           75   6e-12
ref|XP_002526842.1| DNA polymerase I, putative [Ricinus communis...    74   1e-11

>ref|XP_003548949.1| PREDICTED: 5'-3' exonuclease-like [Glycine max]
          Length = 368

 Score =  106 bits (264), Expect = 2e-21
 Identities = 63/113 (55%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
 Frame = -2

Query: 335 MKTLETRLLAGAFIQPCFPCRKCNPTPSSSL-SFKTRKKITVALSXXXXXXXXXXTEPQA 159
           MKTLE  LLAGA++QP FPC   NPT S+S  + KT   +TV             +  Q 
Sbjct: 1   MKTLEMSLLAGAYVQPRFPCNY-NPTLSASCRTQKTATSLTVTTPKKTEKALFTESFDQT 59

Query: 158 QXXXXXXXXK-RVFFLDVNPLCYDGSKPSLHSFARWLSLFLSQVSHSDPVIAV 3
           +        K RVFFLDVNPLCY+GSKPSLHS  RWLSLFL QVSH+DPVIAV
Sbjct: 60  RDAQPLPEKKKRVFFLDVNPLCYEGSKPSLHSLGRWLSLFLEQVSHTDPVIAV 112


>ref|XP_004138652.1| PREDICTED: 5'-3' exonuclease-like [Cucumis sativus]
           gi|449490129|ref|XP_004158516.1| PREDICTED: 5'-3'
           exonuclease-like [Cucumis sativus]
          Length = 377

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 33/42 (78%), Positives = 37/42 (88%)
 Frame = -2

Query: 128 RVFFLDVNPLCYDGSKPSLHSFARWLSLFLSQVSHSDPVIAV 3
           RVFFLDVNPLCY GSKPSL +F RW+S+F  +VSHSDPVIAV
Sbjct: 86  RVFFLDVNPLCYQGSKPSLRNFGRWVSIFFEEVSHSDPVIAV 127


>ref|XP_002327332.1| predicted protein [Populus trichocarpa] gi|222835702|gb|EEE74137.1|
           predicted protein [Populus trichocarpa]
          Length = 368

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 35/42 (83%), Positives = 37/42 (88%)
 Frame = -2

Query: 128 RVFFLDVNPLCYDGSKPSLHSFARWLSLFLSQVSHSDPVIAV 3
           RVFFLDVNPLCY GS PSLHSFA W+SLF SQVS +DPVIAV
Sbjct: 74  RVFFLDVNPLCYAGSTPSLHSFAHWISLFFSQVSLTDPVIAV 115


>gb|ABK93472.1| unknown [Populus trichocarpa]
          Length = 375

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 35/42 (83%), Positives = 37/42 (88%)
 Frame = -2

Query: 128 RVFFLDVNPLCYDGSKPSLHSFARWLSLFLSQVSHSDPVIAV 3
           RVFFLDVNPLCY GS PSLHSFA W+SLF SQVS +DPVIAV
Sbjct: 82  RVFFLDVNPLCYAGSTPSLHSFAHWISLFFSQVSLTDPVIAV 123


>ref|XP_002526842.1| DNA polymerase I, putative [Ricinus communis]
           gi|223533846|gb|EEF35577.1| DNA polymerase I, putative
           [Ricinus communis]
          Length = 411

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 35/42 (83%), Positives = 36/42 (85%)
 Frame = -2

Query: 128 RVFFLDVNPLCYDGSKPSLHSFARWLSLFLSQVSHSDPVIAV 3
           RVFFLDVNPLCY GS PSLHSF  W+SLF SQVS SDPVIAV
Sbjct: 96  RVFFLDVNPLCYAGSTPSLHSFGYWISLFFSQVSLSDPVIAV 137


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