BLASTX nr result

ID: Glycyrrhiza23_contig00027438 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00027438
         (325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003532357.1| PREDICTED: DNA excision repair protein ERCC-...    74   1e-11
ref|XP_003524311.1| PREDICTED: DNA excision repair protein ERCC-...    70   1e-10
ref|XP_003630305.1| DNA excision repair protein ERCC-6-like prot...    66   3e-09

>ref|XP_003532357.1| PREDICTED: DNA excision repair protein ERCC-6-like [Glycine max]
          Length = 1030

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 43/93 (46%), Positives = 50/93 (53%)
 Frame = -2

Query: 282 DILNELNSKFELLSXXXXXXXXXXXXXXXXXETCEEEGLEFGSAGXXXXXXXXXXXXXXS 103
           DILNELNSKFELLS                 + C+++G EFGSAG               
Sbjct: 219 DILNELNSKFELLSVERKPKPKHVEGLVGGEKNCDDDGSEFGSAGSSFSPQQESLS---- 274

Query: 102 RDTKNDGDCGVECDSDDSVQELDHFEPENDGSI 4
             TKN     +E D++DSVQELDHFEPE DGSI
Sbjct: 275 EGTKNGDGDDIEYDANDSVQELDHFEPETDGSI 307


>ref|XP_003524311.1| PREDICTED: DNA excision repair protein ERCC-6-like [Glycine max]
          Length = 938

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 40/88 (45%), Positives = 48/88 (54%)
 Frame = -2

Query: 267 LNSKFELLSXXXXXXXXXXXXXXXXXETCEEEGLEFGSAGXXXXXXXXXXXXXXSRDTKN 88
           +NSKFELLS                 ++C+++G EFGSAG                 TKN
Sbjct: 159 VNSKFELLSVERKPRPKHVEGLAGGKKSCDDDGSEFGSAGSSFSPQQESLS----EGTKN 214

Query: 87  DGDCGVECDSDDSVQELDHFEPENDGSI 4
               G+E D+DDSVQELDHFEPENDGSI
Sbjct: 215 GDGDGIEYDADDSVQELDHFEPENDGSI 242


>ref|XP_003630305.1| DNA excision repair protein ERCC-6-like protein [Medicago
           truncatula] gi|355524327|gb|AET04781.1| DNA excision
           repair protein ERCC-6-like protein [Medicago truncatula]
          Length = 1129

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 46/105 (43%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
 Frame = -2

Query: 282 DILNELNSKFELLSXXXXXXXXXXXXXXXXXETC------------EEEGLEFGSAGXXX 139
           DILNEL+SKF+ LS                                E+EGLEFGSAG   
Sbjct: 264 DILNELSSKFDELSVEKTKPKTVTKPKTVTKPKTVTKPVERGKEIFEDEGLEFGSAGSSF 323

Query: 138 XXXXXXXXXXXSRDTKNDGDCGVECDSDDSVQELDHFEPENDGSI 4
                       +DTKND   G+E +SDDSVQ LDHFEPENDGSI
Sbjct: 324 SPKQDPHDISS-KDTKNDSG-GLEYESDDSVQVLDHFEPENDGSI 366


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