BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00027120
         (619 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...   105   7e-27
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas...    99   3e-26
ref|XP_003612606.1| Replication protein A1-like protein [Medicag...   100   1e-24
gb|ABN09101.1| Ribonuclease H [Medicago truncatula]                   117   2e-24
gb|ABD33309.1| Ribonuclease H [Medicago truncatula]                   116   4e-24

>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 1296

 Score =  105 bits (261), Expect(2) = 7e-27
 Identities = 56/140 (40%), Positives = 81/140 (57%), Gaps = 1/140 (0%)
 Frame = -1

Query: 427  RQETWHPSGEAIAVLNVDGSSFGNTGRAGVGGLLRHGDGEWIQGFYGSVGVA-DSLKAEL 251
            R   W+       +LNVDGS  G   RAG GG+ R+  G ++ G+ G +  + D L AEL
Sbjct: 1127 RMVKWNQGNHQCHILNVDGSCLGTPIRAGFGGIFRNNVGGYLSGYSGFISESTDILLAEL 1186

Query: 250  AAIWQGLSLAWLCGARDLVCYTDSSMALSLLRQAASQSHAYAAIIGSAQDLLRRPWNVKM 71
             A+ QGL +A   G  +L CY+DS + ++L+ +  S+ H YA +I   +DLL    N  +
Sbjct: 1187 TALHQGLIMAAEMGIEELACYSDSLLTINLITRTTSKYHTYAVLIQDIKDLL-SAHNFSV 1245

Query: 70   EHSLREGNSCADSLARMGAA 11
             H  REGN CAD LA++GA+
Sbjct: 1246 YHCFREGNQCADYLAKLGAS 1265



 Score = 41.2 bits (95), Expect(2) = 7e-27
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -3

Query: 611  CSHNEDSQQMWLSLGFRDPLFYAELPSLGWMHKGMKSHNPALFLAGVWTAWTDRNAMSIA 432
            C H   S  +W  LGF    F++      W+           FLAG+W +W  RN M ++
Sbjct: 1035 CKH---SAAIWHKLGFVTAAFFSVSSVQDWIRNFSSGSRAITFLAGLWWSWRHRNLMCLS 1091

Query: 431  QET 423
             ET
Sbjct: 1092 NET 1094


>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 869

 Score = 99.0 bits (245), Expect(2) = 3e-26
 Identities = 56/139 (40%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
 Frame = -1

Query: 427  RQETWHPSGEAIAVLNVDGSSFGNTGRAGVGGLLRHGDGEWIQGFYGSV-GVADSLKAEL 251
            R   W+ S     +LNVDGS  G+  RAG GGL+R+  G ++ GF G +   +D L AEL
Sbjct: 700  RYVKWNNSNFNCTILNVDGSCIGSPIRAGFGGLIRNSVGFYLSGFLGFLPSSSDILLAEL 759

Query: 250  AAIWQGLSLAWLCGARDLVCYTDSSMALSLLRQAASQSHAYAAIIGSAQDLLRRPWNVKM 71
             AI+ G++ A   G  D+  Y+DS ++++L+   +S+ H +AA+I   +D L    N  +
Sbjct: 760  TAIYDGINTAIDMGITDMAVYSDSLLSINLITTTSSKFHIHAALIQDIRDKLSLR-NFSL 818

Query: 70   EHSLREGNSCADSLARMGA 14
             H+LREGN  AD LA++GA
Sbjct: 819  NHTLREGNQSADYLAKLGA 837



 Score = 45.1 bits (105), Expect(2) = 3e-26
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = -3

Query: 593 SQQMWLSLGFRDPLFYAELPSLGWMHKGMKSHNPALFLAGVWTAWTDRNAMSIAQETRNL 414
           S+ +W  +GF +P F+A      W   G+      LF AG+W  W  RNA  +++E+  L
Sbjct: 612 SKIIWHHIGFSEPYFFAVTDIEIWCKSGLIGSKAILFAAGLWWIWRSRNARCMSEESMLL 671

Query: 413 ASL 405
             L
Sbjct: 672 QRL 674


>ref|XP_003612606.1| Replication protein A1-like protein [Medicago truncatula]
           gi|355513941|gb|AES95564.1| Replication protein A1-like
           protein [Medicago truncatula]
          Length = 708

 Score =  100 bits (248), Expect(2) = 1e-24
 Identities = 56/139 (40%), Positives = 85/139 (61%), Gaps = 1/139 (0%)
 Frame = -1

Query: 415 WHPSGEAIAVLNVDGSSFGNTGRAGVGGLLRHGDGEWIQGFYGSV-GVADSLKAELAAIW 239
           W+ +  +  +LNVD S  G+  RAG GG+LR+    ++ GF G +   ++ L AEL AI+
Sbjct: 173 WNNNNHSCVILNVDLSCLGSPTRAGYGGVLRNYASFYLSGFSGYIQNSSNILFAELYAIY 232

Query: 238 QGLSLAWLCGARDLVCYTDSSMALSLLRQAASQSHAYAAIIGSAQDLLRRPWNVKMEHSL 59
           QGL LA   G  DL CY++S   +++L     + H YA +I   ++LL +  NV M H+L
Sbjct: 233 QGLLLAKNMGNSDLFCYSNSLHCINILNGPLMRFHVYAVLIQDIKELLEQ-GNVTMNHTL 291

Query: 58  REGNSCADSLARMGAAQTA 2
           R+GN CAD LA++GA+  +
Sbjct: 292 RKGNQCADFLAKLGASSNS 310



 Score = 38.5 bits (88), Expect(2) = 1e-24
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 611 CSHNEDSQQMWLSLGFRDP-LFYAELPSLGWMHKGMKSHNPALFLAGVWTAWTDRNAMSI 435
           C H   S+ +W   GF  P  F++    + W+  G+       F + +W+ W +RN M +
Sbjct: 77  CIH---SKPLWHQSGFTHPDFFFSNEDIIDWIKNGVMGSGSFSFASTIWSTWRNRNMMCL 133

Query: 434 AQETRNLASL 405
             E  + A L
Sbjct: 134 GNENWSNAQL 143


>gb|ABN09101.1| Ribonuclease H [Medicago truncatula]
          Length = 170

 Score =  117 bits (293), Expect = 2e-24
 Identities = 61/134 (45%), Positives = 77/134 (57%)
 Frame = -1

Query: 415 WHPSGEAIAVLNVDGSSFGNTGRAGVGGLLRHGDGEWIQGFYGSVGVADSLKAELAAIWQ 236
           WHP       +NVDGSSFGN GRAG GGL+R+  G WI GF  S G   +L  EL AI  
Sbjct: 4   WHPPTAPGLKINVDGSSFGNPGRAGFGGLIRNDVGGWIHGFSESCGRVSNLLVELYAILN 63

Query: 235 GLSLAWLCGARDLVCYTDSSMALSLLRQAASQSHAYAAIIGSAQDLLRRPWNVKMEHSLR 56
           GL LAW  G R +    D   AL L+    +  H +A ++G  + L+ R W++   H+LR
Sbjct: 64  GLQLAWDLGFRIITLEPDYKSALDLILDNDTTYHPHAIVLGRIRTLMSRDWSLLFNHTLR 123

Query: 55  EGNSCADSLARMGA 14
           EGN CAD LA+  A
Sbjct: 124 EGNECADWLAKYDA 137


>gb|ABD33309.1| Ribonuclease H [Medicago truncatula]
          Length = 1378

 Score =  116 bits (290), Expect = 4e-24
 Identities = 56/126 (44%), Positives = 80/126 (63%)
 Frame = -1

Query: 385  LNVDGSSFGNTGRAGVGGLLRHGDGEWIQGFYGSVGVADSLKAELAAIWQGLSLAWLCGA 206
            LNVDG    N   AG GGL R  DG W+ GFYGS+G    +KAEL AI QGL  AW  G 
Sbjct: 1185 LNVDGCCMDNPRSAGYGGLFRDVDGNWLGGFYGSLGFTTKMKAELYAICQGLITAWDFGY 1244

Query: 205  RDLVCYTDSSMALSLLRQAASQSHAYAAIIGSAQDLLRRPWNVKMEHSLREGNSCADSLA 26
            R+++  TD   A+  + +A  +  AY +++   + L++R W++ ++HSL+E N+CAD L+
Sbjct: 1245 RNILVETDYLEAIKHIEEANIEHDAYGSLVADIRSLMQRNWSLNLDHSLKEDNACADILS 1304

Query: 25   RMGAAQ 8
            R+GA Q
Sbjct: 1305 RIGAEQ 1310