BLASTX nr result

ID: Glycyrrhiza23_contig00026910 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00026910
         (458 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003630442.1| F-box/FBD/LRR-repeat protein [Medicago trunc...    89   3e-16
ref|XP_003613588.1| F-box/FBD/LRR-repeat protein [Medicago trunc...    82   6e-14
gb|AFK36982.1| unknown [Medicago truncatula]                           80   2e-13
ref|XP_003531174.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g...    75   5e-12
gb|ABD33321.1| Cyclin-like F-box; FBD [Medicago truncatula]            74   1e-11

>ref|XP_003630442.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
           gi|355524464|gb|AET04918.1| F-box/FBD/LRR-repeat protein
           [Medicago truncatula]
          Length = 380

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 43/71 (60%), Positives = 53/71 (74%)
 Frame = -3

Query: 246 VNGILEHLHIVDRVRTGILSRKWRYMWASVPQLEFEEIFFEKYAHLGDIAIFSIITDVLL 67
           ++GILEHL+  D VRT +LSRKWRYMW +VP+LEF + FF KY  L  + +  IIT+VL 
Sbjct: 25  IDGILEHLNARDLVRTSVLSRKWRYMWITVPRLEFCQDFFCKYKDLEALDVSRIITEVLF 84

Query: 66  LFNGPIYKFTL 34
           L NGPIYKF L
Sbjct: 85  LHNGPIYKFIL 95


>ref|XP_003613588.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
           gi|355514923|gb|AES96546.1| F-box/FBD/LRR-repeat protein
           [Medicago truncatula]
          Length = 499

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 51/105 (48%), Positives = 64/105 (60%), Gaps = 13/105 (12%)
 Frame = -3

Query: 300 LMTRSNKKA-------AMVITSIK*VNGILEHLHIVDRVRTGILSRKWRYMWASVPQLEF 142
           LMT SNKKA        +       ++GIL+HL+I D  RT ILSRKWR +W S P LEF
Sbjct: 81  LMTLSNKKANYGDHLDRISDLPSNVIDGILQHLNIRDLARTSILSRKWRDIWISFPWLEF 140

Query: 141 EEIFFEKY------AHLGDIAIFSIITDVLLLFNGPIYKFTLEVP 25
           ++ FF+ Y       H  ++ I  IIT+VLLL NGPI KFTL +P
Sbjct: 141 DKDFFDLYDLKDFKDHSPEVCI--IITEVLLLHNGPINKFTLFIP 183


>gb|AFK36982.1| unknown [Medicago truncatula]
          Length = 418

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 50/104 (48%), Positives = 63/104 (60%), Gaps = 13/104 (12%)
 Frame = -3

Query: 297 MTRSNKKA-------AMVITSIK*VNGILEHLHIVDRVRTGILSRKWRYMWASVPQLEFE 139
           MT SNKKA        +       ++GIL+HL+I D  RT ILSRKWR +W S P LEF+
Sbjct: 1   MTLSNKKANYGDHLDRISDLPSNVIDGILQHLNIRDLARTSILSRKWRDIWISFPWLEFD 60

Query: 138 EIFFEKY------AHLGDIAIFSIITDVLLLFNGPIYKFTLEVP 25
           + FF+ Y       H  ++ I  IIT+VLLL NGPI KFTL +P
Sbjct: 61  KDFFDLYDLKDFKDHSPEVCI--IITEVLLLHNGPINKFTLFIP 102


>ref|XP_003531174.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Glycine
           max]
          Length = 128

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 37/79 (46%), Positives = 50/79 (63%)
 Frame = -3

Query: 237 ILEHLHIVDRVRTGILSRKWRYMWASVPQLEFEEIFFEKYAHLGDIAIFSIITDVLLLFN 58
           IL+ L   D V+T +L+R WRYMW+S P+ EF + FFEK  HLG +   +IIT+ LLL  
Sbjct: 23  ILQRLPFQDLVKTSVLARAWRYMWSSTPRREFRDDFFEKCNHLGYLETSAIITEALLLHT 82

Query: 57  GPIYKFTLEVPLERRIGIE 1
           GPI+ F +  P    I +E
Sbjct: 83  GPIHVFAVIPPPHYPIKLE 101


>gb|ABD33321.1| Cyclin-like F-box; FBD [Medicago truncatula]
          Length = 430

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 38/74 (51%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
 Frame = -3

Query: 246 VNGILEHLHIVDRVRTGILSRKWRYMWASVPQLEFEEIFFEKYAHLGDI---AIFSIITD 76
           ++GIL HL I D V T ILS++WRY W   P+L F E FFE+Y  L D+     + IITD
Sbjct: 21  IDGILSHLDIKDLVGTSILSKQWRYKWTKAPRLWFSEDFFEEYEDLEDLEDPVTYRIITD 80

Query: 75  VLLLFNGPIYKFTL 34
           VL+   GPI KF L
Sbjct: 81  VLMQHQGPIDKFGL 94


Top