BLASTX nr result

ID: Glycyrrhiza23_contig00026608 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00026608
         (579 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003520120.1| PREDICTED: ATP-dependent RNA helicase DHX8 [...   315   3e-84
ref|XP_003517845.1| PREDICTED: ATP-dependent RNA helicase DHX8-l...   310   1e-82
ref|XP_002512067.1| ATP-dependent RNA helicase, putative [Ricinu...   274   7e-72
ref|XP_002282341.2| PREDICTED: putative ATP-dependent RNA helica...   269   3e-70
emb|CBI16803.3| unnamed protein product [Vitis vinifera]              269   3e-70

>ref|XP_003520120.1| PREDICTED: ATP-dependent RNA helicase DHX8 [Glycine max]
          Length = 705

 Score =  315 bits (808), Expect = 3e-84
 Identities = 149/170 (87%), Positives = 162/170 (95%)
 Frame = -2

Query: 578  TATKCFSSPEGDHITLINVYRAANDLLEKRSMEMSKAKSEKVLRKWCKENFISSRSLRHA 399
            TATKCFSSPEGDHITLINVYRA+ND LEKRSMEM+ AK+EKV RKWCKENFI+SRSLRHA
Sbjct: 536  TATKCFSSPEGDHITLINVYRASNDFLEKRSMEMNTAKTEKVYRKWCKENFINSRSLRHA 595

Query: 398  RDIHRQIQGHVQQMGLNLASCGDDMLPYRRCLVASFFLNAAVKQPEGTYRALASGQMVQI 219
            RDIHRQIQGHV+QMGLNL+SCGDDML +RRCL ASFFLNAAVKQP+GTYR LASGQ+VQI
Sbjct: 596  RDIHRQIQGHVEQMGLNLSSCGDDMLQFRRCLAASFFLNAAVKQPDGTYRTLASGQVVQI 655

Query: 218  HPSSVLYRQNPECIIFNELVQTNNKYVRNLTRVDHLWLTELAPQYYATHD 69
            HPSSVL+RQ PEC+IFNELVQTNNKYVRNLTRVD+LWLTELAPQYYA H+
Sbjct: 656  HPSSVLFRQKPECVIFNELVQTNNKYVRNLTRVDYLWLTELAPQYYAMHN 705


>ref|XP_003517845.1| PREDICTED: ATP-dependent RNA helicase DHX8-like [Glycine max]
          Length = 705

 Score =  310 bits (794), Expect = 1e-82
 Identities = 147/170 (86%), Positives = 161/170 (94%)
 Frame = -2

Query: 578  TATKCFSSPEGDHITLINVYRAANDLLEKRSMEMSKAKSEKVLRKWCKENFISSRSLRHA 399
            TATKCFSSP GDHITLINVYRA+ND LEKRSMEM+ AK+EKV RKWCKENFI+SRSLRHA
Sbjct: 536  TATKCFSSPVGDHITLINVYRASNDFLEKRSMEMNMAKTEKVYRKWCKENFINSRSLRHA 595

Query: 398  RDIHRQIQGHVQQMGLNLASCGDDMLPYRRCLVASFFLNAAVKQPEGTYRALASGQMVQI 219
            RDIHRQIQGHV+QMGLNL+SCGDDML + RCL ASFF+NAAVKQP+GTYRALASGQMVQI
Sbjct: 596  RDIHRQIQGHVEQMGLNLSSCGDDMLQFCRCLAASFFINAAVKQPDGTYRALASGQMVQI 655

Query: 218  HPSSVLYRQNPECIIFNELVQTNNKYVRNLTRVDHLWLTELAPQYYATHD 69
            HPSSVL+RQ PEC+IFNELVQTN+KYVRNLTRVD+LWLTELAPQYYA H+
Sbjct: 656  HPSSVLFRQKPECVIFNELVQTNHKYVRNLTRVDYLWLTELAPQYYAMHN 705


>ref|XP_002512067.1| ATP-dependent RNA helicase, putative [Ricinus communis]
            gi|223549247|gb|EEF50736.1| ATP-dependent RNA helicase,
            putative [Ricinus communis]
          Length = 690

 Score =  274 bits (701), Expect = 7e-72
 Identities = 128/172 (74%), Positives = 151/172 (87%), Gaps = 5/172 (2%)
 Frame = -2

Query: 578  TATKCFSSPEGDHITLINVYRAANDLLEKRSMEMS-----KAKSEKVLRKWCKENFISSR 414
            TA KCFSSP+GDH+TLI+VYRAA++LLEKR ME++     K K EK+LRKWCKENFI+ R
Sbjct: 516  TAMKCFSSPDGDHLTLISVYRAADELLEKRKMELNNEKNFKGKGEKILRKWCKENFINGR 575

Query: 413  SLRHARDIHRQIQGHVQQMGLNLASCGDDMLPYRRCLVASFFLNAAVKQPEGTYRALASG 234
            SLRHARDIH QI+GHV+QMGL ++SCGDDML +RRCL ASFFLNAA+KQP+GTYRALASG
Sbjct: 576  SLRHARDIHSQIRGHVEQMGLRVSSCGDDMLQFRRCLAASFFLNAALKQPDGTYRALASG 635

Query: 233  QMVQIHPSSVLYRQNPECIIFNELVQTNNKYVRNLTRVDHLWLTELAPQYYA 78
            Q VQIHP SVL+R   EC+IFNELVQT+ KY+RN+TR+D+LWLTELAP YYA
Sbjct: 636  QTVQIHPFSVLFRSKAECVIFNELVQTSKKYIRNITRIDYLWLTELAPHYYA 687


>ref|XP_002282341.2| PREDICTED: putative ATP-dependent RNA helicase DHX33-like [Vitis
            vinifera]
          Length = 713

 Score =  269 bits (687), Expect = 3e-70
 Identities = 128/170 (75%), Positives = 146/170 (85%)
 Frame = -2

Query: 578  TATKCFSSPEGDHITLINVYRAANDLLEKRSMEMSKAKSEKVLRKWCKENFISSRSLRHA 399
            TA KCFSSPEGDHITLINVYRA+++ +EK      K K+EK LRKWCKENFI+SRSLRHA
Sbjct: 544  TAMKCFSSPEGDHITLINVYRASDEFVEKIKQGNDKEKTEKKLRKWCKENFINSRSLRHA 603

Query: 398  RDIHRQIQGHVQQMGLNLASCGDDMLPYRRCLVASFFLNAAVKQPEGTYRALASGQMVQI 219
            RDIH QI+ H +QMGL +ASCGDDML +RRCL ASFFLNAA+KQPEGTYRALASGQ V+I
Sbjct: 604  RDIHSQIRRHAEQMGLCVASCGDDMLQFRRCLAASFFLNAALKQPEGTYRALASGQSVRI 663

Query: 218  HPSSVLYRQNPECIIFNELVQTNNKYVRNLTRVDHLWLTELAPQYYATHD 69
            HPSSVL+R  PECIIFNELVQTN+ Y+RN+TR+D LWL ELAPQYYA  +
Sbjct: 664  HPSSVLFRTKPECIIFNELVQTNHCYIRNITRIDFLWLPELAPQYYAVQN 713


>emb|CBI16803.3| unnamed protein product [Vitis vinifera]
          Length = 1408

 Score =  269 bits (687), Expect = 3e-70
 Identities = 128/170 (75%), Positives = 146/170 (85%)
 Frame = -2

Query: 578  TATKCFSSPEGDHITLINVYRAANDLLEKRSMEMSKAKSEKVLRKWCKENFISSRSLRHA 399
            TA KCFSSPEGDHITLINVYRA+++ +EK      K K+EK LRKWCKENFI+SRSLRHA
Sbjct: 1239 TAMKCFSSPEGDHITLINVYRASDEFVEKIKQGNDKEKTEKKLRKWCKENFINSRSLRHA 1298

Query: 398  RDIHRQIQGHVQQMGLNLASCGDDMLPYRRCLVASFFLNAAVKQPEGTYRALASGQMVQI 219
            RDIH QI+ H +QMGL +ASCGDDML +RRCL ASFFLNAA+KQPEGTYRALASGQ V+I
Sbjct: 1299 RDIHSQIRRHAEQMGLCVASCGDDMLQFRRCLAASFFLNAALKQPEGTYRALASGQSVRI 1358

Query: 218  HPSSVLYRQNPECIIFNELVQTNNKYVRNLTRVDHLWLTELAPQYYATHD 69
            HPSSVL+R  PECIIFNELVQTN+ Y+RN+TR+D LWL ELAPQYYA  +
Sbjct: 1359 HPSSVLFRTKPECIIFNELVQTNHCYIRNITRIDFLWLPELAPQYYAVQN 1408


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