BLASTX nr result

ID: Glycyrrhiza23_contig00026060 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00026060
         (569 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003597983.1| Pentatricopeptide repeat-containing protein ...   284   6e-75
ref|XP_003542124.1| PREDICTED: pentatricopeptide repeat-containi...   269   3e-70
ref|XP_002274114.2| PREDICTED: pentatricopeptide repeat-containi...   236   2e-60
ref|XP_004158824.1| PREDICTED: pentatricopeptide repeat-containi...   234   6e-60
ref|XP_004136096.1| PREDICTED: uncharacterized protein LOC101205...   234   6e-60

>ref|XP_003597983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355487031|gb|AES68234.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 520

 Score =  284 bits (727), Expect = 6e-75
 Identities = 139/186 (74%), Positives = 150/186 (80%), Gaps = 6/186 (3%)
 Frame = +2

Query: 29  HRMITNPSSFPNHTTFRVLFKRYAAAHAVDDAVNTFNRLNEFNLQDETSFSNLIDALCEH 208
           HRM  NP S PNHTTFRV+FKRY +AH V DAVNTF RLNEFNL+DETSFSNLIDALCE+
Sbjct: 134 HRMRQNPHSLPNHTTFRVMFKRYVSAHCVQDAVNTFQRLNEFNLKDETSFSNLIDALCEY 193

Query: 209 KHVLEAQDLVFAXXXXXXXXXXXXXXXXXXX------IHNIVLRGWFKLGWWSKCWEFWE 370
           KHVLEAQDLVF                          I NIVLRGW+KLGWWSKCWEFW+
Sbjct: 194 KHVLEAQDLVFGDKKNQTLTWIVDGVDGFVASSKNTKIFNIVLRGWYKLGWWSKCWEFWD 253

Query: 371 MMDKKGVQKDLHSYSIYMDILSKGGKPWKAVKLFKEMKRKGIKLDVVVYNIVIRAIGLSQ 550
            MD++GV+KDLHSYSIYMDILSKGGKPWKAVKLFKEMKRKGI+LDVVVYNIVIRAIG+SQ
Sbjct: 254 EMDRRGVEKDLHSYSIYMDILSKGGKPWKAVKLFKEMKRKGIQLDVVVYNIVIRAIGVSQ 313

Query: 551 GVDFSI 568
           GVDFSI
Sbjct: 314 GVDFSI 319


>ref|XP_003542124.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  269 bits (687), Expect = 3e-70
 Identities = 131/179 (73%), Positives = 146/179 (81%)
 Frame = +2

Query: 32  RMITNPSSFPNHTTFRVLFKRYAAAHAVDDAVNTFNRLNEFNLQDETSFSNLIDALCEHK 211
           RM  +PSS PNH TFR++FKRY +AH+V+DA++TFNRL EFNL+D TSFSNL+DALCE+K
Sbjct: 94  RMNAHPSSPPNHATFRLMFKRYVSAHSVNDAIDTFNRLGEFNLKDHTSFSNLLDALCEYK 153

Query: 212 HVLEAQDLVFAXXXXXXXXXXXXXXXXXXXIHNIVLRGWFKLGWWSKCWEFWEMMDKKGV 391
           HVLEAQDL+F                    IHN+VLRGWFKLGWWSKC EFWE MDKKGV
Sbjct: 154 HVLEAQDLLFGNDNRVTLSVDPIGNTK---IHNMVLRGWFKLGWWSKCNEFWEEMDKKGV 210

Query: 392 QKDLHSYSIYMDILSKGGKPWKAVKLFKEMKRKGIKLDVVVYNIVIRAIGLSQGVDFSI 568
            KDLHSYSIYMDIL KGGKPWKAVKLFKE+K+KG KLDVVVYNIVIRAIGLS GVDFSI
Sbjct: 211 HKDLHSYSIYMDILCKGGKPWKAVKLFKEIKKKGFKLDVVVYNIVIRAIGLSHGVDFSI 269


>ref|XP_002274114.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Vitis vinifera]
          Length = 571

 Score =  236 bits (602), Expect = 2e-60
 Identities = 112/179 (62%), Positives = 137/179 (76%)
 Frame = +2

Query: 32  RMITNPSSFPNHTTFRVLFKRYAAAHAVDDAVNTFNRLNEFNLQDETSFSNLIDALCEHK 211
           RM  +P ++PNH TFR +FKRYAAAH V++A+N + R  EFNL+DETS+SNLIDALCE+K
Sbjct: 237 RMKADPVAYPNHVTFRFVFKRYAAAHLVEEAMNAYYRTEEFNLRDETSYSNLIDALCEYK 296

Query: 212 HVLEAQDLVFAXXXXXXXXXXXXXXXXXXXIHNIVLRGWFKLGWWSKCWEFWEMMDKKGV 391
           HV+EA++L                      I+NI+LRGWFK+GWW KC EFWE MD++GV
Sbjct: 297 HVIEAEELFLKESKDLVFNDDVK-------IYNIILRGWFKMGWWKKCREFWEEMDRRGV 349

Query: 392 QKDLHSYSIYMDILSKGGKPWKAVKLFKEMKRKGIKLDVVVYNIVIRAIGLSQGVDFSI 568
            K L+SYSIYMDI  K GKPW+AVKL+KEMK+KGI+LDVV YN VIRAIGLS+GVDFSI
Sbjct: 350 CKSLYSYSIYMDIQCKSGKPWRAVKLYKEMKKKGIRLDVVAYNTVIRAIGLSEGVDFSI 408


>ref|XP_004158824.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Cucumis sativus]
          Length = 450

 Score =  234 bits (598), Expect = 6e-60
 Identities = 111/179 (62%), Positives = 134/179 (74%)
 Frame = +2

Query: 29  HRMITNPSSFPNHTTFRVLFKRYAAAHAVDDAVNTFNRLNEFNLQDETSFSNLIDALCEH 208
           +RM  +PS+ P+H TFR+LFKRYA AH V +A+  + RL EF L+DETSF NLIDALCE 
Sbjct: 105 NRMRQSPSASPDHATFRILFKRYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCES 164

Query: 209 KHVLEAQDLVFAXXXXXXXXXXXXXXXXXXXIHNIVLRGWFKLGWWSKCWEFWEMMDKKG 388
           +HV EAQ+L F                    IHN++LRGW K+GWWSKC +FWE MDKKG
Sbjct: 165 RHVDEAQELCFGKNRKLDCDSSTK-------IHNLILRGWLKMGWWSKCRDFWEEMDKKG 217

Query: 389 VQKDLHSYSIYMDILSKGGKPWKAVKLFKEMKRKGIKLDVVVYNIVIRAIGLSQGVDFS 565
           V+KDLHSYSIYMDI  K GKPWKAVKL+KEMK+KG+KLDVV YN VI A+G+S+GVDF+
Sbjct: 218 VRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFA 276


>ref|XP_004136096.1| PREDICTED: uncharacterized protein LOC101205322 [Cucumis sativus]
          Length = 1559

 Score =  234 bits (598), Expect = 6e-60
 Identities = 111/179 (62%), Positives = 134/179 (74%)
 Frame = +2

Query: 29   HRMITNPSSFPNHTTFRVLFKRYAAAHAVDDAVNTFNRLNEFNLQDETSFSNLIDALCEH 208
            +RM  +PS+ P+H TFR+LFKRYA AH V +A+  + RL EF L+DETSF NLIDALCE 
Sbjct: 656  NRMRQSPSASPDHATFRILFKRYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCES 715

Query: 209  KHVLEAQDLVFAXXXXXXXXXXXXXXXXXXXIHNIVLRGWFKLGWWSKCWEFWEMMDKKG 388
            +HV EAQ+L F                    IHN++LRGW K+GWWSKC +FWE MDKKG
Sbjct: 716  RHVDEAQELCFGKNRKLDCDSSTK-------IHNLILRGWLKMGWWSKCRDFWEEMDKKG 768

Query: 389  VQKDLHSYSIYMDILSKGGKPWKAVKLFKEMKRKGIKLDVVVYNIVIRAIGLSQGVDFS 565
            V+KDLHSYSIYMDI  K GKPWKAVKL+KEMK+KG+KLDVV YN VI A+G+S+GVDF+
Sbjct: 769  VRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFA 827


Top