BLASTX nr result

ID: Glycyrrhiza23_contig00025828 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00025828
         (346 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003608170.1| Glutamate receptor 3.6, partial [Medicago tr...   112   4e-23
ref|XP_003517130.1| PREDICTED: glutamate receptor 3.6-like [Glyc...   105   3e-21
ref|XP_003537690.1| PREDICTED: glutamate receptor 3.6-like [Glyc...   103   1e-20
ref|XP_003547880.1| PREDICTED: glutamate receptor 3.6-like [Glyc...   102   3e-20
ref|XP_003612376.1| Glutamate receptor 3.6 [Medicago truncatula]...   102   3e-20

>ref|XP_003608170.1| Glutamate receptor 3.6, partial [Medicago truncatula]
           gi|355509225|gb|AES90367.1| Glutamate receptor 3.6,
           partial [Medicago truncatula]
          Length = 450

 Score =  112 bits (279), Expect = 4e-23
 Identities = 61/78 (78%), Positives = 67/78 (85%), Gaps = 1/78 (1%)
 Frame = +3

Query: 114 MIRIWLVVWMALSNL-FSSTGAGLDNSTTVPAFVNIGVLYSFNTSVGRIVKIAVESAVED 290
           MIR+W VV M L NL FSST AGLDNST VP FVNIGVLYSFNTSVGR+VKIAVE+AV D
Sbjct: 1   MIRVWFVVLMVLYNLMFSSTVAGLDNST-VPPFVNIGVLYSFNTSVGRMVKIAVEAAVAD 59

Query: 291 VNSDPSILGKTKLKVSLQ 344
           +NSDP+ILG TKL +SLQ
Sbjct: 60  INSDPTILGNTKLNLSLQ 77


>ref|XP_003517130.1| PREDICTED: glutamate receptor 3.6-like [Glycine max]
          Length = 938

 Score =  105 bits (263), Expect = 3e-21
 Identities = 54/77 (70%), Positives = 64/77 (83%)
 Frame = +3

Query: 114 MIRIWLVVWMALSNLFSSTGAGLDNSTTVPAFVNIGVLYSFNTSVGRIVKIAVESAVEDV 293
           MI+ WL+V M LSN F S G G+ NST +P FVNIG L+SFNTSVGR +KIA+E+AVEDV
Sbjct: 1   MIKAWLLVLMVLSNGFFSNGDGMHNST-IPDFVNIGALFSFNTSVGRSIKIAIEAAVEDV 59

Query: 294 NSDPSILGKTKLKVSLQ 344
           NSDP+ILGKTKL +SLQ
Sbjct: 60  NSDPTILGKTKLNLSLQ 76


>ref|XP_003537690.1| PREDICTED: glutamate receptor 3.6-like [Glycine max]
          Length = 938

 Score =  103 bits (257), Expect = 1e-20
 Identities = 52/77 (67%), Positives = 64/77 (83%)
 Frame = +3

Query: 114 MIRIWLVVWMALSNLFSSTGAGLDNSTTVPAFVNIGVLYSFNTSVGRIVKIAVESAVEDV 293
           MI  WL+V MALSN F S G G+ NST +P FVNIG L+SFNTSVGR +KIA+++A+ED+
Sbjct: 1   MILAWLLVLMALSNGFFSNGDGMHNST-IPDFVNIGALFSFNTSVGRSIKIAIKAAIEDI 59

Query: 294 NSDPSILGKTKLKVSLQ 344
           NSDP+ILGKTKL +SLQ
Sbjct: 60  NSDPTILGKTKLNLSLQ 76


>ref|XP_003547880.1| PREDICTED: glutamate receptor 3.6-like [Glycine max]
          Length = 907

 Score =  102 bits (255), Expect = 3e-20
 Identities = 55/77 (71%), Positives = 62/77 (80%)
 Frame = +3

Query: 114 MIRIWLVVWMALSNLFSSTGAGLDNSTTVPAFVNIGVLYSFNTSVGRIVKIAVESAVEDV 293
           MI +WLVV M LS   SSTG   DN T +P+FVNIGVLYSFNTSVGR+VK AV++AV+DV
Sbjct: 1   MIGVWLVVLMVLSKGLSSTGVVPDNFT-IPSFVNIGVLYSFNTSVGRMVKTAVQAAVDDV 59

Query: 294 NSDPSILGKTKLKVSLQ 344
           NSDPSIL  TKLK SLQ
Sbjct: 60  NSDPSILANTKLKASLQ 76


>ref|XP_003612376.1| Glutamate receptor 3.6 [Medicago truncatula]
           gi|355513711|gb|AES95334.1| Glutamate receptor 3.6
           [Medicago truncatula]
          Length = 983

 Score =  102 bits (254), Expect = 3e-20
 Identities = 52/80 (65%), Positives = 66/80 (82%)
 Frame = +3

Query: 105 TATMIRIWLVVWMALSNLFSSTGAGLDNSTTVPAFVNIGVLYSFNTSVGRIVKIAVESAV 284
           ++TM+++WL+  M L N FSST AG  NST  P  VNIG L+SFNTSVG+I+KIA+E+AV
Sbjct: 30  SSTMVKVWLLALMILYNGFSSTVAGTHNSTR-PDIVNIGALFSFNTSVGKIIKIALEAAV 88

Query: 285 EDVNSDPSILGKTKLKVSLQ 344
            DVNSDP+ILG+TKLK+SLQ
Sbjct: 89  NDVNSDPNILGETKLKLSLQ 108


Top