BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00025637
         (476 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003546864.1| PREDICTED: DNA-directed RNA polymerases I, I...   114   8e-24
ref|XP_003531419.1| PREDICTED: DNA-directed RNA polymerases I, I...   112   4e-23
gb|AFK47081.1| unknown [Lotus japonicus]                              108   4e-22
ref|XP_003610520.1| DNA-directed RNA polymerases I, II, and III ...   107   8e-22
ref|XP_004149143.1| PREDICTED: probable DNA-directed RNA polymer...    87   1e-15

>ref|XP_003546864.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Glycine max]
          Length = 145

 Score =  114 bits (285), Expect = 8e-24
 Identities = 60/73 (82%), Positives = 62/73 (84%), Gaps = 5/73 (6%)
 Frame = +1

Query: 1   SVSIQDKFEYIMHGRLYNISNDG-----GSKSQLEVEVYASFGGLQLMLRGHASHCVKFA 165
           SVSIQDKFEYIMHGRLYNI+         SK QLEVEVYASFGGLQLML+GHASHCVKFA
Sbjct: 72  SVSIQDKFEYIMHGRLYNITKPQLEEKECSKPQLEVEVYASFGGLQLMLKGHASHCVKFA 131

Query: 166 TDQKLFLLIRKVE 204
            DQKLFLLIRKVE
Sbjct: 132 VDQKLFLLIRKVE 144


>ref|XP_003531419.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Glycine max]
          Length = 160

 Score =  112 bits (279), Expect = 4e-23
 Identities = 61/88 (69%), Positives = 64/88 (72%), Gaps = 20/88 (22%)
 Frame = +1

Query: 1   SVSIQDKFEYIMHGRLYNIS--------------------NDGGSKSQLEVEVYASFGGL 120
           SVSIQDKFEYIMHGRLYNI+                    N+  SK QLEVEVYASFGGL
Sbjct: 72  SVSIQDKFEYIMHGRLYNITKPQLEKKEKKEKRSESQPEENEECSKPQLEVEVYASFGGL 131

Query: 121 QLMLRGHASHCVKFATDQKLFLLIRKVE 204
           QLML+GHASHCVKFA DQKLFLLIRKVE
Sbjct: 132 QLMLKGHASHCVKFAVDQKLFLLIRKVE 159


>gb|AFK47081.1| unknown [Lotus japonicus]
          Length = 138

 Score =  108 bits (270), Expect = 4e-22
 Identities = 55/68 (80%), Positives = 58/68 (85%)
 Frame = +1

Query: 1   SVSIQDKFEYIMHGRLYNISNDGGSKSQLEVEVYASFGGLQLMLRGHASHCVKFATDQKL 180
           SV I +KFEYIMHGRLYNI+ND   KSQ EVEVYASFGGLQLMLRGH S CVK A DQKL
Sbjct: 72  SVPIHEKFEYIMHGRLYNITND--EKSQHEVEVYASFGGLQLMLRGHVSRCVKLAVDQKL 129

Query: 181 FLLIRKVE 204
           FLLIRK+E
Sbjct: 130 FLLIRKIE 137


>ref|XP_003610520.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
           [Medicago truncatula] gi|355511575|gb|AES92717.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC3 [Medicago truncatula]
          Length = 140

 Score =  107 bits (268), Expect = 8e-22
 Identities = 54/67 (80%), Positives = 59/67 (88%)
 Frame = +1

Query: 4   VSIQDKFEYIMHGRLYNISNDGGSKSQLEVEVYASFGGLQLMLRGHASHCVKFATDQKLF 183
           VSIQ+KFEYIM+GRLY+I  DG S+S  EVEVYASFGGLQLMLRG  SHCVKFA DQKLF
Sbjct: 73  VSIQEKFEYIMYGRLYDIKADGLSRSPPEVEVYASFGGLQLMLRGDPSHCVKFAVDQKLF 132

Query: 184 LLIRKVE 204
           LLIRK+E
Sbjct: 133 LLIRKLE 139


>ref|XP_004149143.1| PREDICTED: probable DNA-directed RNA polymerases I, II, and III
           subunit RPABC3-like [Cucumis sativus]
           gi|449509097|ref|XP_004163492.1| PREDICTED: probable
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC3-like [Cucumis sativus]
          Length = 146

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 41/65 (63%), Positives = 51/65 (78%)
 Frame = +1

Query: 7   SIQDKFEYIMHGRLYNISNDGGSKSQLEVEVYASFGGLQLMLRGHASHCVKFATDQKLFL 186
           S+ DKFEYIMHG+ Y +S D GS S L+VEVYASFGGLQ++L+G   HC KF  DQ +FL
Sbjct: 82  SLADKFEYIMHGKTYKLS-DEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFL 140

Query: 187 LIRKV 201
           L+RK+
Sbjct: 141 LLRKL 145