BLASTX nr result

ID: Glycyrrhiza23_contig00025520 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00025520
         (424 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003549029.1| PREDICTED: pentatricopeptide repeat-containi...   260   7e-68
ref|XP_004168692.1| PREDICTED: pentatricopeptide repeat-containi...   241   5e-62
ref|XP_004142091.1| PREDICTED: pentatricopeptide repeat-containi...   241   5e-62
ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containi...   234   6e-60
emb|CBI32673.3| unnamed protein product [Vitis vinifera]              234   6e-60

>ref|XP_003549029.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
           mitochondrial-like [Glycine max]
          Length = 506

 Score =  260 bits (665), Expect = 7e-68
 Identities = 121/140 (86%), Positives = 132/140 (94%)
 Frame = +3

Query: 3   LWACNHAGLADEGYSYFNKARIESPSLLKPEHYACMVDMLARSGRFTEAESFLRSLPFDP 182
           LWACNHAGL DEGYSYFN+AR+ESP LLK EHYACMV++LARSGRF EAE FL+S+PFDP
Sbjct: 321 LWACNHAGLVDEGYSYFNRARLESPGLLKSEHYACMVNLLARSGRFAEAEDFLQSVPFDP 380

Query: 183 GIGFWKALLGGCQIHSNIELGELAARKILTLDPDDVSSYVMLSNAHSAAGRWSDVSTLRT 362
           G+GFWKALL GCQIHSN+ LGELAARKIL LDPDDVSSYVMLSNAHSAAG+WSDV+T+RT
Sbjct: 381 GLGFWKALLAGCQIHSNMRLGELAARKILDLDPDDVSSYVMLSNAHSAAGKWSDVATVRT 440

Query: 363 EMKEKGMKRIPGSSWIEVRG 422
           EMKEKGMKRIPGSSWIEVRG
Sbjct: 441 EMKEKGMKRIPGSSWIEVRG 460


>ref|XP_004168692.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
           mitochondrial-like [Cucumis sativus]
          Length = 516

 Score =  241 bits (615), Expect = 5e-62
 Identities = 109/139 (78%), Positives = 125/139 (89%)
 Frame = +3

Query: 3   LWACNHAGLADEGYSYFNKARIESPSLLKPEHYACMVDMLARSGRFTEAESFLRSLPFDP 182
           LWACNHAGL DEGYSYFN+AR+++P+LLK EHYACMVD+L+RSG+F  AE F+  LPFDP
Sbjct: 336 LWACNHAGLVDEGYSYFNQARLDNPNLLKAEHYACMVDLLSRSGQFKRAEEFIHDLPFDP 395

Query: 183 GIGFWKALLGGCQIHSNIELGELAARKILTLDPDDVSSYVMLSNAHSAAGRWSDVSTLRT 362
           GIGFWKALLGGCQIHSN+ELGELAA++IL LDP DVSSYVM+SNAHSAAG+W  VS LR 
Sbjct: 396 GIGFWKALLGGCQIHSNVELGELAAQRILALDPGDVSSYVMMSNAHSAAGKWHSVSILRR 455

Query: 363 EMKEKGMKRIPGSSWIEVR 419
           EMKEKG+KRIPG SWIE+R
Sbjct: 456 EMKEKGLKRIPGCSWIEIR 474


>ref|XP_004142091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
           mitochondrial-like [Cucumis sativus]
          Length = 516

 Score =  241 bits (615), Expect = 5e-62
 Identities = 109/139 (78%), Positives = 125/139 (89%)
 Frame = +3

Query: 3   LWACNHAGLADEGYSYFNKARIESPSLLKPEHYACMVDMLARSGRFTEAESFLRSLPFDP 182
           LWACNHAGL DEGYSYFN+AR+++P+LLK EHYACMVD+L+RSG+F  AE F+  LPFDP
Sbjct: 336 LWACNHAGLVDEGYSYFNQARLDNPNLLKAEHYACMVDLLSRSGQFKRAEEFIHDLPFDP 395

Query: 183 GIGFWKALLGGCQIHSNIELGELAARKILTLDPDDVSSYVMLSNAHSAAGRWSDVSTLRT 362
           GIGFWKALLGGCQIHSN+ELGELAA++IL LDP DVSSYVM+SNAHSAAG+W  VS LR 
Sbjct: 396 GIGFWKALLGGCQIHSNVELGELAAQRILALDPGDVSSYVMMSNAHSAAGKWHSVSILRR 455

Query: 363 EMKEKGMKRIPGSSWIEVR 419
           EMKEKG+KRIPG SWIE+R
Sbjct: 456 EMKEKGLKRIPGCSWIEIR 474


>ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
           mitochondrial-like [Vitis vinifera]
          Length = 538

 Score =  234 bits (597), Expect = 6e-60
 Identities = 109/139 (78%), Positives = 122/139 (87%)
 Frame = +3

Query: 3   LWACNHAGLADEGYSYFNKARIESPSLLKPEHYACMVDMLARSGRFTEAESFLRSLPFDP 182
           L ACNH+GL D+GYSYFNKAR+E P LL PEH+ACMVD+L+RSGRF EAE FL  LPF P
Sbjct: 351 LLACNHSGLVDKGYSYFNKARVEEPGLLTPEHHACMVDLLSRSGRFKEAEKFLHELPFVP 410

Query: 183 GIGFWKALLGGCQIHSNIELGELAARKILTLDPDDVSSYVMLSNAHSAAGRWSDVSTLRT 362
           GIGFWKALLGGC+IHSN+ELGELAARKIL LDP+DVSSYVMLSNAHSAAGRW  VS +R 
Sbjct: 411 GIGFWKALLGGCRIHSNMELGELAARKILALDPEDVSSYVMLSNAHSAAGRWQSVSMIRK 470

Query: 363 EMKEKGMKRIPGSSWIEVR 419
           EM+EK MK +PGSSWIE+R
Sbjct: 471 EMREKRMKGVPGSSWIEIR 489


>emb|CBI32673.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  234 bits (597), Expect = 6e-60
 Identities = 109/139 (78%), Positives = 122/139 (87%)
 Frame = +3

Query: 3    LWACNHAGLADEGYSYFNKARIESPSLLKPEHYACMVDMLARSGRFTEAESFLRSLPFDP 182
            L ACNH+GL D+GYSYFNKAR+E P LL PEH+ACMVD+L+RSGRF EAE FL  LPF P
Sbjct: 632  LLACNHSGLVDKGYSYFNKARVEEPGLLTPEHHACMVDLLSRSGRFKEAEKFLHELPFVP 691

Query: 183  GIGFWKALLGGCQIHSNIELGELAARKILTLDPDDVSSYVMLSNAHSAAGRWSDVSTLRT 362
            GIGFWKALLGGC+IHSN+ELGELAARKIL LDP+DVSSYVMLSNAHSAAGRW  VS +R 
Sbjct: 692  GIGFWKALLGGCRIHSNMELGELAARKILALDPEDVSSYVMLSNAHSAAGRWQSVSMIRK 751

Query: 363  EMKEKGMKRIPGSSWIEVR 419
            EM+EK MK +PGSSWIE+R
Sbjct: 752  EMREKRMKGVPGSSWIEIR 770


Top