BLASTX nr result

ID: Glycyrrhiza23_contig00025258 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00025258
         (720 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK34661.1| unknown [Lotus japonicus]                              190   2e-46
ref|NP_001235376.1| uncharacterized protein LOC100306204 [Glycin...   167   2e-39
ref|XP_002325966.1| predicted protein [Populus trichocarpa] gi|2...   164   2e-38
ref|NP_564172.1| C3HC4-type RING finger protein [Arabidopsis tha...   160   3e-37
ref|XP_002887420.1| zinc finger family protein [Arabidopsis lyra...   159   7e-37

>gb|AFK34661.1| unknown [Lotus japonicus]
          Length = 188

 Score =  190 bits (483), Expect = 2e-46
 Identities = 89/143 (62%), Positives = 102/143 (71%)
 Frame = -3

Query: 664 PPLNDLCSVCHGSFHIPCQANCSHWFCANCIMMVWQHASGVQPCKCPLCRRPITLLVPTD 485
           PPLNDLCSVCHG+FHIPCQANCSHWFCANCIM+VW H S +QPCKCPLCRRPITLLVPT+
Sbjct: 6   PPLNDLCSVCHGNFHIPCQANCSHWFCANCIMLVWNHGSAIQPCKCPLCRRPITLLVPTE 65

Query: 484 NSLRQLRHDPEVAHLLSNIKKYNRVFGAGSSGXXXXXXXXXXXXXXXXXXXXDPHRSLPL 305
                 R +PEVAH+LS I+ YNR FGA SSG                    DP RSLPL
Sbjct: 66  QDSASHRQEPEVAHVLSQIQTYNRFFGARSSGPLQRMLDLPFLLRRLAREFLDPQRSLPL 125

Query: 304 VIRARVFIAVLYCSPFLFIIITI 236
           VIRARV+IA++  + ++F  I I
Sbjct: 126 VIRARVYIAMIISAIYVFSPIDI 148


>ref|NP_001235376.1| uncharacterized protein LOC100306204 [Glycine max]
           gi|255627857|gb|ACU14273.1| unknown [Glycine max]
          Length = 186

 Score =  167 bits (424), Expect = 2e-39
 Identities = 81/143 (56%), Positives = 94/143 (65%)
 Frame = -3

Query: 664 PPLNDLCSVCHGSFHIPCQANCSHWFCANCIMMVWQHASGVQPCKCPLCRRPITLLVPTD 485
           PP NDLCSVCHG+FHIPCQANCSHWFC NCIM+VWQH S    CKCPLCRR I+LLVPT+
Sbjct: 5   PPANDLCSVCHGNFHIPCQANCSHWFCGNCIMLVWQHGSVGCSCKCPLCRRAISLLVPTE 64

Query: 484 NSLRQLRHDPEVAHLLSNIKKYNRVFGAGSSGXXXXXXXXXXXXXXXXXXXXDPHRSLPL 305
            SLRQ + DPEV+ +LS I  YNR FG   +                      PHRSLPL
Sbjct: 65  ESLRQ-QQDPEVSQILSKIHAYNRFFGGQPTTLYQRLRDLPFLLHRLLREFLHPHRSLPL 123

Query: 304 VIRARVFIAVLYCSPFLFIIITI 236
           +IRARVF+ ++    +LF  I I
Sbjct: 124 LIRARVFVVMIASVIYLFSPIDI 146


>ref|XP_002325966.1| predicted protein [Populus trichocarpa] gi|222862841|gb|EEF00348.1|
           predicted protein [Populus trichocarpa]
          Length = 185

 Score =  164 bits (415), Expect = 2e-38
 Identities = 78/143 (54%), Positives = 97/143 (67%)
 Frame = -3

Query: 664 PPLNDLCSVCHGSFHIPCQANCSHWFCANCIMMVWQHASGVQPCKCPLCRRPITLLVPTD 485
           PP+ND CS+CHG F+I CQANCSHWFC +CIM+VW H S +QPCKCPLCRR ITLLVP +
Sbjct: 4   PPVNDFCSICHGHFNIACQANCSHWFCGDCIMLVWHHGSVLQPCKCPLCRRQITLLVPGE 63

Query: 484 NSLRQLRHDPEVAHLLSNIKKYNRVFGAGSSGXXXXXXXXXXXXXXXXXXXXDPHRSLPL 305
            SLR+ R DP+VA +L  I++YN +FG  +SG                    DP RSLPL
Sbjct: 64  ASLRE-RSDPDVAEVLGKIERYNHLFGGNTSGLIQRMQDLPFLLRRLLREIMDPQRSLPL 122

Query: 304 VIRARVFIAVLYCSPFLFIIITI 236
           VIRARV+IAV+  + ++   I I
Sbjct: 123 VIRARVYIAVVLSAIYVISPIDI 145


>ref|NP_564172.1| C3HC4-type RING finger protein [Arabidopsis thaliana]
           gi|110740529|dbj|BAE98370.1| hypothetical protein
           [Arabidopsis thaliana] gi|332192128|gb|AEE30249.1|
           C3HC4-type RING finger protein [Arabidopsis thaliana]
          Length = 185

 Score =  160 bits (404), Expect = 3e-37
 Identities = 73/143 (51%), Positives = 99/143 (69%)
 Frame = -3

Query: 664 PPLNDLCSVCHGSFHIPCQANCSHWFCANCIMMVWQHASGVQPCKCPLCRRPITLLVPTD 485
           PP N+LCS+CHG F+ PCQ+NCSHWFC NCIM+VW+H S ++PCKCPLCRRPI+LLVP++
Sbjct: 4   PPENELCSICHGHFNAPCQSNCSHWFCGNCIMLVWRHGSTLRPCKCPLCRRPISLLVPSE 63

Query: 484 NSLRQLRHDPEVAHLLSNIKKYNRVFGAGSSGXXXXXXXXXXXXXXXXXXXXDPHRSLPL 305
            ++R  R+D  V+ +L +++ YNRVFG  SSG                    DP R+LPL
Sbjct: 64  ETVRS-RNDATVSEVLHDVETYNRVFGGQSSGLIQRMQDLPFLLRRLLREMMDPQRTLPL 122

Query: 304 VIRARVFIAVLYCSPFLFIIITI 236
           VIRARV+IA++  + ++   I I
Sbjct: 123 VIRARVYIALILSAIYIISPIDI 145


>ref|XP_002887420.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297333261|gb|EFH63679.1| zinc finger family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 185

 Score =  159 bits (401), Expect = 7e-37
 Identities = 74/143 (51%), Positives = 96/143 (67%)
 Frame = -3

Query: 664 PPLNDLCSVCHGSFHIPCQANCSHWFCANCIMMVWQHASGVQPCKCPLCRRPITLLVPTD 485
           PP NDLCS+CH  F  PCQANCSHWFC NCIM VW+H S +QPCKCPLCRRPI+LLVP++
Sbjct: 4   PPENDLCSICHSHFTAPCQANCSHWFCGNCIMQVWRHGSTLQPCKCPLCRRPISLLVPSE 63

Query: 484 NSLRQLRHDPEVAHLLSNIKKYNRVFGAGSSGXXXXXXXXXXXXXXXXXXXXDPHRSLPL 305
           +++R  R+D  VA +L N++ YNR+FG  S+                     DP R+LPL
Sbjct: 64  DTIRD-RNDSTVADVLGNLETYNRLFGGRSTSLVQRMQDLPFLLRRLLREMMDPQRTLPL 122

Query: 304 VIRARVFIAVLYCSPFLFIIITI 236
           VIRARV+IA++  + ++   I I
Sbjct: 123 VIRARVYIAMILSAIYIISPIDI 145


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