BLASTX nr result
ID: Glycyrrhiza23_contig00025188
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00025188
(292 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containi... 120 2e-25
ref|XP_003613018.1| Pentatricopeptide repeat-containing protein ... 116 2e-24
ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containi... 109 2e-22
emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera] 109 2e-22
ref|XP_002532388.1| pentatricopeptide repeat-containing protein,... 101 6e-21
>ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Glycine max]
Length = 892
Score = 120 bits (300), Expect = 2e-25
Identities = 57/79 (72%), Positives = 65/79 (82%)
Frame = -3
Query: 239 AGRLDEALELFLQMKEDGCFPTVRTYTVLIGALCGSGRETEALCFFEEIGERGCEPNVYT 60
AG+L EALE + +M+EDGCFPTVRTYTVL+ ALC SGRE EAL F E+ ERGCEPNVYT
Sbjct: 268 AGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYT 327
Query: 59 YTVLIDCSCKEDRVDEGMK 3
YTVLID CKE R+DE +K
Sbjct: 328 YTVLIDYLCKEGRMDEALK 346
Score = 66.6 bits (161), Expect = 2e-09
Identities = 35/78 (44%), Positives = 46/78 (58%)
Frame = -3
Query: 239 AGRLDEALELFLQMKEDGCFPTVRTYTVLIGALCGSGRETEALCFFEEIGERGCEPNVYT 60
+GR EAL LF +M+E GC P V TYTVLI LC GR EAL E+ E+G P+V
Sbjct: 303 SGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVP 362
Query: 59 YTVLIDCSCKEDRVDEGM 6
+ LI CK +++ +
Sbjct: 363 FNALIGSYCKRGMMEDAV 380
>ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 894
Score = 116 bits (291), Expect = 2e-24
Identities = 55/78 (70%), Positives = 63/78 (80%)
Frame = -3
Query: 236 GRLDEALELFLQMKEDGCFPTVRTYTVLIGALCGSGRETEALCFFEEIGERGCEPNVYTY 57
G++DEALELF QMKEDGCFP V TYTVL+ A C G+ETEAL FFEE+ E G EPNVYTY
Sbjct: 274 GKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTY 333
Query: 56 TVLIDCSCKEDRVDEGMK 3
TVLID CK ++DEGM+
Sbjct: 334 TVLIDYFCKVGKMDEGME 351
Score = 54.7 bits (130), Expect(2) = 3e-09
Identities = 29/76 (38%), Positives = 43/76 (56%)
Frame = -3
Query: 230 LDEALELFLQMKEDGCFPTVRTYTVLIGALCGSGRETEALCFFEEIGERGCEPNVYTYTV 51
L +A ++F M ++GC +YT LI C G+ EAL F ++ E GC P+V TYTV
Sbjct: 241 LGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTV 300
Query: 50 LIDCSCKEDRVDEGMK 3
L+ C+ + E +K
Sbjct: 301 LVAAFCEVGKETEALK 316
Score = 31.2 bits (69), Expect(2) = 3e-09
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -2
Query: 291 NAHCKLGNVVAAKLY 247
NAHCK+GNVV AK Y
Sbjct: 198 NAHCKIGNVVVAKAY 212
>ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera] gi|296084392|emb|CBI24780.3| unnamed
protein product [Vitis vinifera]
Length = 890
Score = 109 bits (273), Expect = 2e-22
Identities = 53/79 (67%), Positives = 63/79 (79%)
Frame = -3
Query: 239 AGRLDEALELFLQMKEDGCFPTVRTYTVLIGALCGSGRETEALCFFEEIGERGCEPNVYT 60
AGR++EAL+LF M ED C PTVRTYTVLI AL GSGR+ EAL F E+ E+GCEPNV+T
Sbjct: 277 AGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHT 336
Query: 59 YTVLIDCSCKEDRVDEGMK 3
YTVLID CKE+++DE K
Sbjct: 337 YTVLIDGLCKENKMDEARK 355
Score = 75.5 bits (184), Expect = 4e-12
Identities = 38/79 (48%), Positives = 47/79 (59%)
Frame = -3
Query: 239 AGRLDEALELFLQMKEDGCFPTVRTYTVLIGALCGSGRETEALCFFEEIGERGCEPNVYT 60
+GR EAL LF +MKE GC P V TYTVLI LC + EA E+ E+G P+V T
Sbjct: 312 SGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVT 371
Query: 59 YTVLIDCSCKEDRVDEGMK 3
Y LID CKE +D+ +
Sbjct: 372 YNALIDGYCKEGMIDDAFE 390
Score = 55.1 bits (131), Expect(2) = 3e-08
Identities = 30/62 (48%), Positives = 37/62 (59%)
Frame = -3
Query: 230 LDEALELFLQMKEDGCFPTVRTYTVLIGALCGSGRETEALCFFEEIGERGCEPNVYTYTV 51
+D A E+FL M + GC +YT LI LC +GR EAL F ++ E C P V TYTV
Sbjct: 245 VDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTV 304
Query: 50 LI 45
LI
Sbjct: 305 LI 306
Score = 27.3 bits (59), Expect(2) = 3e-08
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 291 NAHCKLGNVVAAKLY 247
N +CK+GNVV A+LY
Sbjct: 202 NGYCKIGNVVEAELY 216
>emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 109 bits (273), Expect = 2e-22
Identities = 53/79 (67%), Positives = 63/79 (79%)
Frame = -3
Query: 239 AGRLDEALELFLQMKEDGCFPTVRTYTVLIGALCGSGRETEALCFFEEIGERGCEPNVYT 60
AGR++EAL+LF M ED C PTVRTYTVLI AL GSGR+ EAL F E+ E+GCEPNV+T
Sbjct: 277 AGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHT 336
Query: 59 YTVLIDCSCKEDRVDEGMK 3
YTVLID CKE+++DE K
Sbjct: 337 YTVLIDGLCKENKMDEARK 355
Score = 75.5 bits (184), Expect = 4e-12
Identities = 38/79 (48%), Positives = 47/79 (59%)
Frame = -3
Query: 239 AGRLDEALELFLQMKEDGCFPTVRTYTVLIGALCGSGRETEALCFFEEIGERGCEPNVYT 60
+GR EAL LF +MKE GC P V TYTVLI LC + EA E+ E+G P+V T
Sbjct: 312 SGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVT 371
Query: 59 YTVLIDCSCKEDRVDEGMK 3
Y LID CKE +D+ +
Sbjct: 372 YNALIDGYCKEGMIDDAFE 390
Score = 55.1 bits (131), Expect(2) = 3e-08
Identities = 30/62 (48%), Positives = 37/62 (59%)
Frame = -3
Query: 230 LDEALELFLQMKEDGCFPTVRTYTVLIGALCGSGRETEALCFFEEIGERGCEPNVYTYTV 51
+D A E+FL M + GC +YT LI LC +GR EAL F ++ E C P V TYTV
Sbjct: 245 VDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTV 304
Query: 50 LI 45
LI
Sbjct: 305 LI 306
Score = 27.3 bits (59), Expect(2) = 3e-08
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 291 NAHCKLGNVVAAKLY 247
N +CK+GNVV A+LY
Sbjct: 202 NGYCKIGNVVEAELY 216
>ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527912|gb|EEF30000.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 676
Score = 101 bits (252), Expect(2) = 6e-21
Identities = 43/78 (55%), Positives = 61/78 (78%)
Frame = -3
Query: 236 GRLDEALELFLQMKEDGCFPTVRTYTVLIGALCGSGRETEALCFFEEIGERGCEPNVYTY 57
GR+DE + +F +M+ED C+PTVRTYTV++ AL SGR EA+ F E+ ERGCEPN++TY
Sbjct: 53 GRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTY 112
Query: 56 TVLIDCSCKEDRVDEGMK 3
TV+I+ CKE +++EG +
Sbjct: 113 TVMINAMCKETKLEEGRR 130
Score = 23.9 bits (50), Expect(2) = 6e-21
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 291 NAHCKLGNVVAAKL 250
N +CKLGN+V A L
Sbjct: 3 NGYCKLGNLVEANL 16
Score = 67.8 bits (164), Expect = 9e-10
Identities = 33/75 (44%), Positives = 46/75 (61%)
Frame = -3
Query: 239 AGRLDEALELFLQMKEDGCFPTVRTYTVLIGALCGSGRETEALCFFEEIGERGCEPNVYT 60
+GR EA+ LF +M+E GC P + TYTV+I A+C + E +E+ E+G P+V T
Sbjct: 87 SGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPT 146
Query: 59 YTVLIDCSCKEDRVD 15
Y LID CKE V+
Sbjct: 147 YNALIDGYCKEGMVE 161
Score = 58.2 bits (139), Expect = 7e-07
Identities = 31/75 (41%), Positives = 39/75 (52%)
Frame = -3
Query: 236 GRLDEALELFLQMKEDGCFPTVRTYTVLIGALCGSGRETEALCFFEEIGERGCEPNVYTY 57
G LD A L M E+G P TY+V I LC GR EA F + E+G + N Y
Sbjct: 228 GYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIY 287
Query: 56 TVLIDCSCKEDRVDE 12
T LID CK ++D+
Sbjct: 288 TALIDGYCKAGKMDD 302
Score = 57.4 bits (137), Expect = 1e-06
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = -3
Query: 233 RLDEALELFLQMKEDGCFPTVRTYTVLIGALCGSGRETEALCFFEEIGERGCEPNVYTYT 54
+ + ALELF +M E GC P + TY LI LC GR A F+ + ERG P+ Y
Sbjct: 503 KFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYN 562
Query: 53 VLIDCSCK 30
L++C C+
Sbjct: 563 SLLNCCCE 570