BLASTX nr result

ID: Glycyrrhiza23_contig00025158 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00025158
         (887 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003555264.1| PREDICTED: probable ATP-dependent RNA helica...   278   1e-72
ref|XP_002280133.1| PREDICTED: probable ATP-dependent RNA helica...   264   2e-68
ref|XP_002526307.1| ATP-dependent RNA helicase, putative [Ricinu...   256   4e-66
emb|CBI26949.3| unnamed protein product [Vitis vinifera]              248   2e-63
ref|XP_004135386.1| PREDICTED: probable ATP-dependent RNA helica...   230   3e-58

>ref|XP_003555264.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
           max]
          Length = 1209

 Score =  278 bits (711), Expect = 1e-72
 Identities = 140/182 (76%), Positives = 156/182 (85%)
 Frame = -2

Query: 547 NKRNSRYVSAYDDGVSEEGSDREFEAPSLPSGFPNDNIDEWKRKLTVLLNDKSKQELISR 368
           +++ SR+VS+YDD VSEEGSDREF+ PSLP+  P DN DEWKRK T+LL DKSKQEL+SR
Sbjct: 108 DEQRSRFVSSYDDTVSEEGSDREFQPPSLPNASPIDNTDEWKRKFTMLLRDKSKQELVSR 167

Query: 367 EKRDRRDFDQIAVLASRMGLYSHMYAKVVVFSKVPLPNYRYDLDDRRPQREVGMPIAMLR 188
           EK+DRRDFD+IAVLASRMGLYSHMYAKVVVFSKVPLPNYRYDLDDRRPQREV + I M  
Sbjct: 168 EKKDRRDFDRIAVLASRMGLYSHMYAKVVVFSKVPLPNYRYDLDDRRPQREVSLSITMYT 227

Query: 187 RVGAYFEEYLIQKSRVNKSFPDLSFARSSSNGSLGTDEGLFEQSEPLASSTAVAEKILSR 8
           +V  YFEEYL QKSR+NKSF DLS ARSSSNGS+GTDEGLFE  EPLASS A  EKIL +
Sbjct: 228 QVNVYFEEYLGQKSRMNKSFSDLSSARSSSNGSIGTDEGLFELPEPLASSNAYMEKILRQ 287

Query: 7   IS 2
            S
Sbjct: 288 RS 289


>ref|XP_002280133.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Vitis
           vinifera]
          Length = 1195

 Score =  264 bits (674), Expect = 2e-68
 Identities = 151/262 (57%), Positives = 178/262 (67%), Gaps = 8/262 (3%)
 Frame = -2

Query: 763 PKTLKPLIQLPF-LAMKDRPSLSSHGTVYIPPHHRLRSVVTSANSPAPVAAKL----REN 599
           PKTLKP    P  + MKDRP  S     YIPPHHRLRS VTS+ SP   AA L    R++
Sbjct: 12  PKTLKPSAPPPLHILMKDRPPPSCVSR-YIPPHHRLRSAVTSSASPNLNAASLDSTSRDH 70

Query: 598 XXXXXXXXXXXXPEQVPNKRNSRYVSAYD---DGVSEEGSDREFEAPSLPSGFPNDNIDE 428
                       P   P K   +  S YD   + VSEEGSDRE E+ S       D IDE
Sbjct: 71  QGTLLNPRNTSLPHSQPQKLQQKDNSLYDFLYEEVSEEGSDREIESSSHGGASAPDTIDE 130

Query: 427 WKRKLTVLLNDKSKQELISREKRDRRDFDQIAVLASRMGLYSHMYAKVVVFSKVPLPNYR 248
           WK K T+LL +K KQEL+SREK+DRRDF+QIA+LASRMGLYSH+Y KVVVFSKVPLPNYR
Sbjct: 131 WKWKFTMLLRNKDKQELVSREKKDRRDFEQIAILASRMGLYSHLYVKVVVFSKVPLPNYR 190

Query: 247 YDLDDRRPQREVGMPIAMLRRVGAYFEEYLIQKSRVNKSFPDLSFARSSSNGSLGTDEGL 68
           +DLDDRRPQREV +P+ + RRV A+ EEYL QK   N++F D++F+RSSS  S+ TDEGL
Sbjct: 191 FDLDDRRPQREVILPLGLDRRVEAHLEEYLSQKFTTNENFQDIAFSRSSSTSSIATDEGL 250

Query: 67  FEQSEPLASSTAVAEKILSRIS 2
           FEQ EPLA S +V EKI+ R S
Sbjct: 251 FEQPEPLAVSRSVIEKIVWRRS 272


>ref|XP_002526307.1| ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223534388|gb|EEF36096.1| ATP-dependent RNA helicase,
           putative [Ricinus communis]
          Length = 1172

 Score =  256 bits (655), Expect = 4e-66
 Identities = 141/257 (54%), Positives = 170/257 (66%), Gaps = 17/257 (6%)
 Frame = -2

Query: 721 MKDRPSLSSHGTVYIPPHHRLRSVVTSAN-SPAPVAAKLRENXXXXXXXXXXXXPEQVP- 548
           MKDRP  S    VY+PPH RLRSV+T  + +    A+ + +N               VP 
Sbjct: 1   MKDRPPSS----VYVPPHQRLRSVITKPSYTSGSAASSVGDNLNHNHNRSAVLNGSPVPY 56

Query: 547 --------------NKRNSRYVSAYDDGVSEEGSDREFEAPS-LPSGFPNDNIDEWKRKL 413
                         N  N +++SAY DGV EEGSDRE E+ + LP    +DNI EWK KL
Sbjct: 57  FQQQQQQGNGFVDKNISNYKFISAYGDGVFEEGSDREMESSTVLPGASLSDNIQEWKWKL 116

Query: 412 TVLLNDKSKQELISREKRDRRDFDQIAVLASRMGLYSHMYAKVVVFSKVPLPNYRYDLDD 233
           T+LL DK KQEL+SR+K+DRRDFDQIA LAS MGLYS +Y KVVVFSK+PLPNYR+DLDD
Sbjct: 117 TMLLRDKEKQELVSRDKKDRRDFDQIAALASGMGLYSQLYVKVVVFSKIPLPNYRFDLDD 176

Query: 232 RRPQREVGMPIAMLRRVGAYFEEYLIQKSRVNKSFPDLSFARSSSNGSLGTDEGLFEQSE 53
           +RPQREV +P+ + +RV AY  EYL Q+S   + FPD S +RSSSN SL TDEGLFE +E
Sbjct: 177 KRPQREVNLPLGLQKRVDAYLGEYLFQRSNTKERFPDFSSSRSSSNSSLATDEGLFEPTE 236

Query: 52  PLASSTAVAEKILSRIS 2
            LASS AV EKIL R S
Sbjct: 237 SLASSKAVMEKILQRRS 253


>emb|CBI26949.3| unnamed protein product [Vitis vinifera]
          Length = 1181

 Score =  248 bits (632), Expect = 2e-63
 Identities = 144/259 (55%), Positives = 170/259 (65%), Gaps = 19/259 (7%)
 Frame = -2

Query: 721 MKDRPSLSSHGTVYIPPHHRLRSVVTSANSPAPVAAKL----RENXXXXXXXXXXXXPEQ 554
           MKDRP  S     YIPPHHRLRS VTS+ SP   AA L    R++            P  
Sbjct: 1   MKDRPPPSCVSR-YIPPHHRLRSAVTSSASPNLNAASLDSTSRDHQGTLLNPRNTSLPHS 59

Query: 553 VPNKRNSRYVSAYD---DGVSEEGSDREFEAPS------------LPSGFPNDNIDEWKR 419
            P K   +  S YD   + VSEEGSDRE E+ S                   D IDEWK 
Sbjct: 60  QPQKLQQKDNSLYDFLYEEVSEEGSDREIESSSHGVSLIHLLVCEFGGASAPDTIDEWKW 119

Query: 418 KLTVLLNDKSKQELISREKRDRRDFDQIAVLASRMGLYSHMYAKVVVFSKVPLPNYRYDL 239
           K T+LL +K KQEL+SREK+DRRDF+QIA+LASRMGLYSH+Y KVVVFSKVPLPNYR+DL
Sbjct: 120 KFTMLLRNKDKQELVSREKKDRRDFEQIAILASRMGLYSHLYVKVVVFSKVPLPNYRFDL 179

Query: 238 DDRRPQREVGMPIAMLRRVGAYFEEYLIQKSRVNKSFPDLSFARSSSNGSLGTDEGLFEQ 59
           DDRRPQREV +P+ + RRV A+ EEYL QK   N++F D++F+RSSS  S+ TDEGLFEQ
Sbjct: 180 DDRRPQREVILPLGLDRRVEAHLEEYLSQKFTTNENFQDIAFSRSSSTSSIATDEGLFEQ 239

Query: 58  SEPLASSTAVAEKILSRIS 2
            EPLA S +V EKI+ R S
Sbjct: 240 PEPLAVSRSVIEKIVWRRS 258


>ref|XP_004135386.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
           sativus]
          Length = 1181

 Score =  230 bits (587), Expect = 3e-58
 Identities = 138/252 (54%), Positives = 164/252 (65%), Gaps = 12/252 (4%)
 Frame = -2

Query: 721 MKDRPSLSSHGTVYIPPHHRLRSVVTSANSPAPVAA----------KLRENXXXXXXXXX 572
           MKDR S SS+  VY+PPH RLRSVVT  NS +P +A           L ++         
Sbjct: 1   MKDR-SPSSNAAVYVPPHIRLRSVVTPNNS-SPASAVDCKLKTAPPSLLDSGTTASPCLH 58

Query: 571 XXXPEQVPNKRNSRYV--SAYDDGVSEEGSDREFEAPSLPSGFPNDNIDEWKRKLTVLLN 398
               E +P   NSR    +AY DG   +     FE        P+ NID WKRKL +LL 
Sbjct: 59  ARSQELLPTG-NSRLQCDTAYSDGAPTDSWSFNFECSHQSGIAPSVNIDLWKRKLALLLR 117

Query: 397 DKSKQELISREKRDRRDFDQIAVLASRMGLYSHMYAKVVVFSKVPLPNYRYDLDDRRPQR 218
           DK KQELISREK+DR DF++IA LASR+GLYSH+YAKV VFSKVPLPNYR+DLDDRRPQR
Sbjct: 118 DKEKQELISREKKDRHDFEEIAALASRVGLYSHLYAKVAVFSKVPLPNYRFDLDDRRPQR 177

Query: 217 EVGMPIAMLRRVGAYFEEYLIQKSRVNKSFPDLSFARSSSNGSLGTDEGLFEQSEPLASS 38
           EV +P  +LRRV  +  E+L QKSR  K F D+S +R+SS+GS+ TDEGLFEQ EP  SS
Sbjct: 178 EVSLPPGLLRRVDEHLGEFLSQKSRC-KGFQDISVSRTSSSGSIATDEGLFEQPEPQGSS 236

Query: 37  TAVAEKILSRIS 2
            AV EKIL R S
Sbjct: 237 KAVMEKILWRRS 248


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