BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00025140
         (1860 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chlor...   823   0.0  
ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chlor...   803   0.0  
ref|XP_003626283.1| RNA pseudourine synthase [Medicago truncatul...   711   0.0  
ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|2...   682   0.0  
ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chlor...   682   0.0  

>ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
            max]
          Length = 473

 Score =  823 bits (2126), Expect = 0.0
 Identities = 390/466 (83%), Positives = 415/466 (89%), Gaps = 3/466 (0%)
 Frame = +2

Query: 2    FTGGCRSFAVPAAARALRI---SLNKHLNKHALSWRCWSSHNSNTALAGETASSTIDAGX 172
            F GGCR  AVPAAARA+RI   +L+ H NKHA SW C SSHNSNTALAGE   ST DAG 
Sbjct: 8    FAGGCRILAVPAAARAIRIPRAALSSHHNKHAPSWGCRSSHNSNTALAGEAEFSTTDAGN 67

Query: 173  XXXXXXXXXYPKYDRLLPCPSHKSPPRIEHLVVSEGGSVLEYICEALDLPPLFVADLIQF 352
                     +PKYDRLLPCPSHK+PPRIEHLV+SEGG VLE IC+ALDLPPL+V+DLIQF
Sbjct: 68   LTATSSSDSFPKYDRLLPCPSHKNPPRIEHLVISEGGPVLELICKALDLPPLYVSDLIQF 127

Query: 353  GAVYYALVCPQPPPNATPEQIRIFKQVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFV 532
            GAVYYALVCPQPPPNAT EQIR+FK+VTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFV
Sbjct: 128  GAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFV 187

Query: 533  EPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGGTTDNIEESCVTFA 712
            EPGTYLRVHVHPKRFPR YEIDWRSRIIAV ESYVVLDKPAGTSVGGTTDNIEESC TFA
Sbjct: 188  EPGTYLRVHVHPKRFPRSYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCATFA 247

Query: 713  TRALGLTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREXXXXXXXXXXXXSPLPTG 892
            TRALG+TTPLMTTHQIDNCTEGCVVLARTK+YCS+FHGKIRE            SPLPTG
Sbjct: 248  TRALGMTTPLMTTHQIDNCTEGCVVLARTKDYCSIFHGKIREKKVKKLYLALAASPLPTG 307

Query: 893  IFTHYMRPINMAPRLISEDFIKGWHLCQLEVMDCRKVPWPTTVVQDKYCVDDCGWPSQDY 1072
            I THYMRPINMAPRLISEDFIKGWHLCQLEV++CRK+PWPTT +QDKYCV+DCGWPSQDY
Sbjct: 308  IITHYMRPINMAPRLISEDFIKGWHLCQLEVLECRKIPWPTTAIQDKYCVEDCGWPSQDY 367

Query: 1073 AYECKINLLTGRTHQIRAQFAACKAPLIGDSMYMPAAIAEMVNPGLSPFGKYKKDFSRES 1252
            AYECKINLLTG+THQIRAQFAA KAPLIGDSMYMPAAIA++ NPGL+PFGKYKKDFS ES
Sbjct: 368  AYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIADVSNPGLNPFGKYKKDFSSES 427

Query: 1253 EKEMAVINWTTQHGKEPSVAIGLQACQISWDDDEHFYKAGLPWWRC 1390
            EKE AV+NW  QHGKEPSVAIGLQACQISWDDDEHFY+AGLPWWRC
Sbjct: 428  EKETAVVNWMAQHGKEPSVAIGLQACQISWDDDEHFYEAGLPWWRC 473


>ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
            max]
          Length = 473

 Score =  803 bits (2075), Expect = 0.0
 Identities = 384/466 (82%), Positives = 407/466 (87%), Gaps = 3/466 (0%)
 Frame = +2

Query: 2    FTGGCRSFAVPAAARALRIS---LNKHLNKHALSWRCWSSHNSNTALAGETASSTIDAGX 172
            F+G CRS A+PAAARA+RIS   L  + NKH  SW C SSHNSNTALAGE    T DAG 
Sbjct: 8    FSGSCRSLAMPAAARAVRISRAALVNNRNKHPPSWCCRSSHNSNTALAGEAEFLTTDAGI 67

Query: 173  XXXXXXXXXYPKYDRLLPCPSHKSPPRIEHLVVSEGGSVLEYICEALDLPPLFVADLIQF 352
                     + KYDRLLPCPSHK+PPRIEHLVVSEGG VLE+IC+ALDLPPL+V+DLIQF
Sbjct: 68   LNATSSSDSFRKYDRLLPCPSHKTPPRIEHLVVSEGGPVLEHICKALDLPPLYVSDLIQF 127

Query: 353  GAVYYALVCPQPPPNATPEQIRIFKQVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFV 532
            GAVYYALVCPQPPPNAT EQIR+FK+VTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFV
Sbjct: 128  GAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFV 187

Query: 533  EPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGGTTDNIEESCVTFA 712
            EPGTYLRVHVHPKR PRCYEIDWRSRII V ESYVVLDKPAGTSVGGTTDNIEESC TFA
Sbjct: 188  EPGTYLRVHVHPKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTDNIEESCATFA 247

Query: 713  TRALGLTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREXXXXXXXXXXXXSPLPTG 892
            TRALG+TTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIRE             PLPTG
Sbjct: 248  TRALGMTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKFYLALAAFPLPTG 307

Query: 893  IFTHYMRPINMAPRLISEDFIKGWHLCQLEVMDCRKVPWPTTVVQDKYCVDDCGWPSQDY 1072
            I THYMRPI+MAPRLISEDFIKGWHLCQLEV++CRKVPWP T +QDKYC++DCGWPSQDY
Sbjct: 308  IITHYMRPIDMAPRLISEDFIKGWHLCQLEVLECRKVPWPATAIQDKYCIEDCGWPSQDY 367

Query: 1073 AYECKINLLTGRTHQIRAQFAACKAPLIGDSMYMPAAIAEMVNPGLSPFGKYKKDFSRES 1252
            AYECKINLLTG+THQIRAQFAA KAPLIGDSMYMPAAIA M NPGL+PFGKYKKDFS ES
Sbjct: 368  AYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIANMSNPGLNPFGKYKKDFSSES 427

Query: 1253 EKEMAVINWTTQHGKEPSVAIGLQACQISWDDDEHFYKAGLPWWRC 1390
            EKE AV+NW  QHGKEPSVAIGLQACQISWDDDEHFY+A  PWWRC
Sbjct: 428  EKETAVVNWIAQHGKEPSVAIGLQACQISWDDDEHFYEASSPWWRC 473


>ref|XP_003626283.1| RNA pseudourine synthase [Medicago truncatula]
            gi|355501298|gb|AES82501.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 462

 Score =  711 bits (1835), Expect = 0.0
 Identities = 352/473 (74%), Positives = 380/473 (80%), Gaps = 12/473 (2%)
 Frame = +2

Query: 2    FTGGCRSFAVPAAARALRISLNKHLNKHALSWRCWSSHNSNTALAGETASSTIDAGXXXX 181
            F G  R   VP  A A+ IS+NKHLNKH   W C  S++SN        S T+       
Sbjct: 9    FAGSSRILGVPDTASAVPISVNKHLNKHEFGWCCRISNDSNAI------SETVT------ 56

Query: 182  XXXXXXYPKYDRLLPCPSHKSPPRIEHLVVSEGGSVLEYICEALDLPPLFVADLIQFGAV 361
                  YPKYDRLLPCPSHK PPRIEHLVVS+ G VL+YIC+ALDLP LFVADLIQFGAV
Sbjct: 57   ------YPKYDRLLPCPSHKIPPRIEHLVVSQEGPVLQYICKALDLPHLFVADLIQFGAV 110

Query: 362  YYALVCPQPPPNATPEQIRIFKQVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFVEPG 541
            Y+ALV P+PPP AT EQIRIF+QVTEP VL+KR+S+KGKT+REAQKTFRVT  +QFVEPG
Sbjct: 111  YFALVSPEPPPTATAEQIRIFEQVTEPLVLQKRSSLKGKTIREAQKTFRVTDANQFVEPG 170

Query: 542  TYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGGTTDNIEESCVTFATRA 721
            TYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVG TT NIEESCVTFATRA
Sbjct: 171  TYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNIEESCVTFATRA 230

Query: 722  LGLTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREXXXXXXXXXXXXSPLPTGIFT 901
            LGLTTPL+TTHQIDNCTEGCVVLAR KEYCSVFH KIRE            SPLP GI  
Sbjct: 231  LGLTTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLALAASPLPIGIIK 290

Query: 902  HYMRPINMAPRLISE-----------DF-IKGWHLCQLEVMDCRKVPWPTTVVQDKYCVD 1045
            HYMRP N APRLISE           D+ IKGWH+CQLEVMDCRK+PWP  VVQD+Y   
Sbjct: 291  HYMRPTNTAPRLISEGNSTQIGMLCKDYCIKGWHICQLEVMDCRKIPWPAIVVQDEY--- 347

Query: 1046 DCGWPSQDYAYECKINLLTGRTHQIRAQFAACKAPLIGDSMYMPAAIAEMVNPGLSPFGK 1225
             CGWPSQDYAYECKINLLTGRTHQIRAQFAACKAP+IGD+MYMPAAIAEM+NPGL+PFGK
Sbjct: 348  -CGWPSQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMYMPAAIAEMINPGLNPFGK 406

Query: 1226 YKKDFSRESEKEMAVINWTTQHGKEPSVAIGLQACQISWDDDEHFYKAGLPWW 1384
            Y KDFS ESEK+ AVINW  QHGKEPSVAIGLQACQISWDDDE+ Y+AGLPWW
Sbjct: 407  YNKDFSSESEKKTAVINWIAQHGKEPSVAIGLQACQISWDDDEYIYRAGLPWW 459


>ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|222847890|gb|EEE85437.1|
            predicted protein [Populus trichocarpa]
          Length = 470

 Score =  682 bits (1761), Expect = 0.0
 Identities = 328/469 (69%), Positives = 374/469 (79%), Gaps = 6/469 (1%)
 Frame = +2

Query: 2    FTGGCRSFAVPAAA-RALRISLNKHLNKHALSW-----RCWSSHNSNTALAGETASSTID 163
            F+   RSF+ P    R L  +    LNK AL W     +  S  +    +A  TA+S+++
Sbjct: 10   FSYSYRSFSAPVTLLRTLAFTRAYSLNKKALVWCSLSKKKLSCESLKQDIACTTATSSVN 69

Query: 164  AGXXXXXXXXXXYPKYDRLLPCPSHKSPPRIEHLVVSEGGSVLEYICEALDLPPLFVADL 343
                        YP+Y RLLPCPSH SPPRIEHLVVSE G VL+YIC+ALDLPPLFVADL
Sbjct: 70   G-----------YPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDYICKALDLPPLFVADL 118

Query: 344  IQFGAVYYALVCPQPPPNATPEQIRIFKQVTEPSVLRKRASIKGKTVREAQKTFRVTHVD 523
            I FGAV+YALVCPQPP  ATPEQIR+F++VT PSVL+KRASIKGKTVREAQKTFR+THVD
Sbjct: 119  IHFGAVHYALVCPQPPRTATPEQIRVFEEVTAPSVLKKRASIKGKTVREAQKTFRITHVD 178

Query: 524  QFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGGTTDNIEESCV 703
            QF+E G YLRVHVHPKRFPRCY+IDW+SRII V ES+VVLDKPAGTSVGGTTDNIEESC 
Sbjct: 179  QFLEAGMYLRVHVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGGTTDNIEESCA 238

Query: 704  TFATRALGLTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREXXXXXXXXXXXXSPL 883
            TFATRALGLT PL TTHQIDNCTEGCVVLART+E CSVFHGKIRE            SP+
Sbjct: 239  TFATRALGLTAPLRTTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKKLYIALAASPV 298

Query: 884  PTGIFTHYMRPINMAPRLISEDFIKGWHLCQLEVMDCRKVPWPTTVVQDKYCVDDCGWPS 1063
            P G+  HYMRPINMAPRL+SE+FIKGWHLCQLEVM+C++VPWP  V+++KYCV DCGWPS
Sbjct: 299  PIGVVNHYMRPINMAPRLVSEEFIKGWHLCQLEVMECKRVPWPDAVMEEKYCVQDCGWPS 358

Query: 1064 QDYAYECKINLLTGRTHQIRAQFAACKAPLIGDSMYMPAAIAEMVNPGLSPFGKYKKDFS 1243
            +D+AYECKINLLTGRTHQIRAQ AA  APL+GDSMYMPAA+AEMV+PG +PFGKYKK ++
Sbjct: 359  KDHAYECKINLLTGRTHQIRAQLAALGAPLVGDSMYMPAAVAEMVSPGCNPFGKYKKQYT 418

Query: 1244 RESEKEMAVINWTTQHGKEPSVAIGLQACQISWDDDEHFYKAGLPWWRC 1390
             E +K +AV  W   HGKEP+VAIGLQACQISWDD +H Y AG PWWRC
Sbjct: 419  SEDDKAIAVEEWVLCHGKEPNVAIGLQACQISWDDGKHIYNAGSPWWRC 467


>ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis vinifera]
            gi|302144082|emb|CBI23187.3| unnamed protein product
            [Vitis vinifera]
          Length = 472

 Score =  682 bits (1759), Expect = 0.0
 Identities = 319/461 (69%), Positives = 370/461 (80%)
 Frame = +2

Query: 2    FTGGCRSFAVPAAARALRISLNKHLNKHALSWRCWSSHNSNTALAGETASSTIDAGXXXX 181
            +   CRSF  P A      S N    +H     C ++      L   + S+   +     
Sbjct: 19   WNSNCRSFGTPVALARTLASSNVFSRRHKRVVWCSNNPTCTRELTASSDSANTSS----- 73

Query: 182  XXXXXXYPKYDRLLPCPSHKSPPRIEHLVVSEGGSVLEYICEALDLPPLFVADLIQFGAV 361
                  YP+Y RLLPCPS   PPR+EHLVVSEGG VL+YI +ALDLPPLFVADLI FGAV
Sbjct: 74   ---VNGYPEYHRLLPCPSQNGPPRVEHLVVSEGGCVLDYISKALDLPPLFVADLIHFGAV 130

Query: 362  YYALVCPQPPPNATPEQIRIFKQVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFVEPG 541
            YYALVCP+PPP+ATPEQ+R+FK+VT PSVLRKR SIKGKT+REAQKTFR+T V++FVE G
Sbjct: 131  YYALVCPEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKTFRITDVNEFVEAG 190

Query: 542  TYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGGTTDNIEESCVTFATRA 721
            TYLRVHVHPKRFPRCYEIDW+SRIIAV ESYVVLDKPAGTSVGGTTDNIEESC TFATRA
Sbjct: 191  TYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRA 250

Query: 722  LGLTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREXXXXXXXXXXXXSPLPTGIFT 901
            LGLTTPL TTHQIDNCTEGCVVLARTKEYCSVFHGKIRE            +P+P GI T
Sbjct: 251  LGLTTPLRTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYRALAAAPMPIGIVT 310

Query: 902  HYMRPINMAPRLISEDFIKGWHLCQLEVMDCRKVPWPTTVVQDKYCVDDCGWPSQDYAYE 1081
            HYMRP+N+APRLISEDFIKGW+LCQLEV++C++VPWP+T++++KYC++D GWP ++ A++
Sbjct: 311  HYMRPVNIAPRLISEDFIKGWYLCQLEVLECKEVPWPSTLIEEKYCIEDRGWPLKNSAFK 370

Query: 1082 CKINLLTGRTHQIRAQFAACKAPLIGDSMYMPAAIAEMVNPGLSPFGKYKKDFSRESEKE 1261
            CKINLLTGRTHQIRAQ AAC AP++GDSMYMPAAIAE+ +PGL+PFGKYKK ++ E+++E
Sbjct: 371  CKINLLTGRTHQIRAQLAACGAPIVGDSMYMPAAIAEITSPGLNPFGKYKKKYTTENDRE 430

Query: 1262 MAVINWTTQHGKEPSVAIGLQACQISWDDDEHFYKAGLPWW 1384
             AV  W  QHGKEP VAIGLQACQISWDD EHFYKAG PWW
Sbjct: 431  TAVAEWIAQHGKEPGVAIGLQACQISWDDGEHFYKAGSPWW 471