BLASTX nr result

ID: Glycyrrhiza23_contig00025083 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00025083
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003623821.1| Pentatricopeptide repeat-containing protein ...   177   1e-42
ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containi...   174   7e-42
ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containi...   161   4e-38
emb|CBI38763.3| unnamed protein product [Vitis vinifera]              161   4e-38
emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]   161   4e-38

>ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355498836|gb|AES80039.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  177 bits (448), Expect = 1e-42
 Identities = 84/103 (81%), Positives = 91/103 (88%)
 Frame = -1

Query: 310  VKEPGCSWIEINSMVHTFISEDRGHPREVEIYSKVDEIIVRIKEAGYVPDMSFSLHDMDR 131
            VKEPGCSW+EINS V+TFIS+DRGHPRE EIY+K+DEII+RIKEAGYVPDMSFSLHDMD+
Sbjct: 700  VKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDK 759

Query: 130  EGKEVGLAYHSEKLTVAFXXXXXXXXXPIRIFKNLRVCGDCHS 2
            EGKEVGLAYHSEKL VAF         PIRIFKNLRVCGDCHS
Sbjct: 760  EGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNLRVCGDCHS 802


>ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 852

 Score =  174 bits (441), Expect = 7e-42
 Identities = 83/102 (81%), Positives = 87/102 (85%)
 Frame = -1

Query: 307  KEPGCSWIEINSMVHTFISEDRGHPREVEIYSKVDEIIVRIKEAGYVPDMSFSLHDMDRE 128
            KEPGCSWIE+NS +HTFISEDRGHPRE EIYSK+DEII RIKE GYVPDM+FSLHDMDRE
Sbjct: 716  KEPGCSWIEMNSRLHTFISEDRGHPREAEIYSKIDEIIRRIKEVGYVPDMNFSLHDMDRE 775

Query: 127  GKEVGLAYHSEKLTVAFXXXXXXXXXPIRIFKNLRVCGDCHS 2
            GKE GLAYHSEKL VAF         PIRIFKNLRVCGDCHS
Sbjct: 776  GKEAGLAYHSEKLAVAFGLLASPPGAPIRIFKNLRVCGDCHS 817


>ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  161 bits (408), Expect = 4e-38
 Identities = 75/102 (73%), Positives = 85/102 (83%)
 Frame = -1

Query: 307 KEPGCSWIEINSMVHTFISEDRGHPREVEIYSKVDEIIVRIKEAGYVPDMSFSLHDMDRE 128
           KEPGCSWIE++S VH F+SEDR HPR  EIYSKVDEI++ IKEAGYVPDM+F+LHDMD E
Sbjct: 650 KEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEE 709

Query: 127 GKEVGLAYHSEKLTVAFXXXXXXXXXPIRIFKNLRVCGDCHS 2
           GKE+GLAYHSEKL VAF         PIRIFKNLR+CGDCH+
Sbjct: 710 GKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHT 751


>emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  161 bits (408), Expect = 4e-38
 Identities = 75/102 (73%), Positives = 85/102 (83%)
 Frame = -1

Query: 307 KEPGCSWIEINSMVHTFISEDRGHPREVEIYSKVDEIIVRIKEAGYVPDMSFSLHDMDRE 128
           KEPGCSWIE++S VH F+SEDR HPR  EIYSKVDEI++ IKEAGYVPDM+F+LHDMD E
Sbjct: 583 KEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEE 642

Query: 127 GKEVGLAYHSEKLTVAFXXXXXXXXXPIRIFKNLRVCGDCHS 2
           GKE+GLAYHSEKL VAF         PIRIFKNLR+CGDCH+
Sbjct: 643 GKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHT 684


>emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  161 bits (408), Expect = 4e-38
 Identities = 75/102 (73%), Positives = 85/102 (83%)
 Frame = -1

Query: 307 KEPGCSWIEINSMVHTFISEDRGHPREVEIYSKVDEIIVRIKEAGYVPDMSFSLHDMDRE 128
           KEPGCSWIE++S VH F+SEDR HPR  EIYSKVDEI++ IKEAGYVPDM+F+LHDMD E
Sbjct: 304 KEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEE 363

Query: 127 GKEVGLAYHSEKLTVAFXXXXXXXXXPIRIFKNLRVCGDCHS 2
           GKE+GLAYHSEKL VAF         PIRIFKNLR+CGDCH+
Sbjct: 364 GKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHT 405


Top