BLASTX nr result

ID: Glycyrrhiza23_contig00024969 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00024969
         (302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN82481.1| hypothetical protein VITISV_012747 [Vitis vinifera]   120   9e-26
ref|XP_003633738.1| PREDICTED: pentatricopeptide repeat-containi...   119   2e-25
ref|XP_002531188.1| pentatricopeptide repeat-containing protein,...   119   2e-25
ref|XP_002305195.1| predicted protein [Populus trichocarpa] gi|2...   117   1e-24
ref|XP_004171986.1| PREDICTED: pentatricopeptide repeat-containi...   107   8e-22

>emb|CAN82481.1| hypothetical protein VITISV_012747 [Vitis vinifera]
          Length = 642

 Score =  120 bits (302), Expect = 9e-26
 Identities = 57/94 (60%), Positives = 71/94 (75%)
 Frame = +2

Query: 5   ICDSFRRGRNWDAVSCEFGSVELSDSLVEQVLLELKDPIDAKTVLGFFHWSAKTHRFKHG 184
           +CDS RRG NWDA++  FGS+EL++S V +VLLELK PIDAK  LGFFHWSA+    +HG
Sbjct: 44  LCDSLRRGLNWDALNQRFGSLELTESFVGRVLLELKKPIDAKQALGFFHWSAQCKNLEHG 103

Query: 185 VRSYCIAIHVLLRAGLVTDAKALLESLANKNTDS 286
           V SYCI IH+L+ A L+ DA++LLES   KN  S
Sbjct: 104 VASYCITIHILVGAHLLMDAQSLLESTLKKNAGS 137


>ref|XP_003633738.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like [Vitis vinifera]
          Length = 547

 Score =  119 bits (299), Expect = 2e-25
 Identities = 56/94 (59%), Positives = 71/94 (75%)
 Frame = +2

Query: 5   ICDSFRRGRNWDAVSCEFGSVELSDSLVEQVLLELKDPIDAKTVLGFFHWSAKTHRFKHG 184
           +CDS RRG NWDA++  FGS+EL++S V +VLLELK PIDAK  LGFFHWSA+    +HG
Sbjct: 44  LCDSLRRGLNWDALNQRFGSLELTESFVGRVLLELKKPIDAKQALGFFHWSAQCKNLEHG 103

Query: 185 VRSYCIAIHVLLRAGLVTDAKALLESLANKNTDS 286
           + SYCI IH+L+ A L+ DA++LLES   KN  S
Sbjct: 104 LASYCITIHILVGAQLLMDAQSLLESTLKKNAGS 137


>ref|XP_002531188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529229|gb|EEF31203.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 619

 Score =  119 bits (299), Expect = 2e-25
 Identities = 57/94 (60%), Positives = 73/94 (77%)
 Frame = +2

Query: 2   AICDSFRRGRNWDAVSCEFGSVELSDSLVEQVLLELKDPIDAKTVLGFFHWSAKTHRFKH 181
           AICDS RRG NW ++S +F  VEL+  LVE+VLLELK+PIDAK  LGFFHWSA+   F H
Sbjct: 49  AICDSLRRGHNWVSLSGKFQYVELNHLLVEKVLLELKEPIDAKRALGFFHWSAQRKNFVH 108

Query: 182 GVRSYCIAIHVLLRAGLVTDAKALLESLANKNTD 283
           GV SYC+ +++L+RA L+ DA+ALLES+  KN +
Sbjct: 109 GVWSYCLMVNILVRAQLLNDAQALLESILKKNVE 142


>ref|XP_002305195.1| predicted protein [Populus trichocarpa] gi|222848159|gb|EEE85706.1|
           predicted protein [Populus trichocarpa]
          Length = 556

 Score =  117 bits (293), Expect = 1e-24
 Identities = 55/96 (57%), Positives = 74/96 (77%)
 Frame = +2

Query: 2   AICDSFRRGRNWDAVSCEFGSVELSDSLVEQVLLELKDPIDAKTVLGFFHWSAKTHRFKH 181
           +ICDS RRG NWD ++ +F S++L++ LV+ VLLELK+P DAK  LGFFHWSA+   F H
Sbjct: 49  SICDSLRRGYNWDTLNRKFESLQLNNLLVKNVLLELKEPTDAKRALGFFHWSAR-RNFVH 107

Query: 182 GVRSYCIAIHVLLRAGLVTDAKALLESLANKNTDSP 289
           GV+SYC+ IH+L++A L+ DA+ALLESL  K+   P
Sbjct: 108 GVQSYCLMIHILIQARLIMDAQALLESLLKKSVGDP 143


>ref|XP_004171986.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like [Cucumis sativus]
          Length = 539

 Score =  107 bits (268), Expect = 8e-22
 Identities = 50/92 (54%), Positives = 69/92 (75%)
 Frame = +2

Query: 2   AICDSFRRGRNWDAVSCEFGSVELSDSLVEQVLLELKDPIDAKTVLGFFHWSAKTHRFKH 181
           +ICDS  R ++WD +S +F  +EL+D LV++VLL+ + P+DAK  LGFFHWSAK   F H
Sbjct: 44  SICDSLTRRQSWDTLSRKFQFLELNDFLVQKVLLKFQQPVDAKRALGFFHWSAKRKNFNH 103

Query: 182 GVRSYCIAIHVLLRAGLVTDAKALLESLANKN 277
           G +S+ I IH+L++A LV DA+ALLES+  KN
Sbjct: 104 GPQSFGIMIHILVKARLVLDARALLESILKKN 135


Top