BLASTX nr result

ID: Glycyrrhiza23_contig00024946 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00024946
         (446 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003591531.1| Zinc finger CCCH domain-containing protein [...   272   2e-71
ref|XP_002523081.1| ATP-dependent RNA helicase, putative [Ricinu...   188   3e-46
ref|XP_002267435.2| PREDICTED: zinc finger CCCH domain-containin...   175   4e-42
emb|CBI36846.3| unnamed protein product [Vitis vinifera]              175   4e-42
ref|NP_182290.1| zinc finger CCCH domain-containing protein 31 [...   169   2e-40

>ref|XP_003591531.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355480579|gb|AES61782.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 1035

 Score =  272 bits (696), Expect = 2e-71
 Identities = 125/148 (84%), Positives = 133/148 (89%)
 Frame = -3

Query: 444 IIHPFGEDELFVEYTDCYYGDRTILTGRKEMEFMAHFCAFQFWQHIFKDKYRIEHLKQVL 265
           IIHPFGEDELF +Y DCYYGDRTIL GRKEMEFMA+FCAFQFWQHIFKDKYR+EHLKQVL
Sbjct: 536 IIHPFGEDELFAKYIDCYYGDRTILAGRKEMEFMANFCAFQFWQHIFKDKYRLEHLKQVL 595

Query: 264 MTDNVYPATQLMPKLEEDWCSFHNLSQSSLHQVSEIYNDILNTIHRSRPKFLSSFRGLPP 85
            +D+VYP T LM KLEEDWC FHNL QSSLHQ+SEIYNDIL TIHR RPKFLSSF GL P
Sbjct: 596 KSDDVYPDTHLMLKLEEDWCFFHNLYQSSLHQMSEIYNDILYTIHRFRPKFLSSFHGLVP 655

Query: 84  YYDPYEFKHTCLFKSQPNGHSDVVAADE 1
           YYDPYEF HTCLFKSQP+GHSDVV+ DE
Sbjct: 656 YYDPYEFSHTCLFKSQPDGHSDVVSVDE 683


>ref|XP_002523081.1| ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223537643|gb|EEF39266.1| ATP-dependent RNA helicase,
           putative [Ricinus communis]
          Length = 1025

 Score =  188 bits (478), Expect = 3e-46
 Identities = 87/151 (57%), Positives = 109/151 (72%), Gaps = 3/151 (1%)
 Frame = -3

Query: 444 IIHPFGEDELFVEYTDCYYG---DRTILTGRKEMEFMAHFCAFQFWQHIFKDKYRIEHLK 274
           I+HPFGE+ LF EY   YYG   +  +  GRKEM  M + CA++FWQ +FKD++R+EHLK
Sbjct: 516 ILHPFGEEHLFAEYAYHYYGGDCNNMVRIGRKEMILMGNLCAYKFWQRVFKDRHRLEHLK 575

Query: 273 QVLMTDNVYPATQLMPKLEEDWCSFHNLSQSSLHQVSEIYNDILNTIHRSRPKFLSSFRG 94
           ++   D +   T L+PK+EE+WCSFHNL  SSLHQVSEIY DIL+++HR RP+FL    G
Sbjct: 576 RLSTFDEMKAVTSLLPKIEEEWCSFHNLVWSSLHQVSEIYEDILSSLHRFRPRFLGKCDG 635

Query: 93  LPPYYDPYEFKHTCLFKSQPNGHSDVVAADE 1
           LP YYDPYEF H CL KSQ N    VVAAD+
Sbjct: 636 LPTYYDPYEFGHVCLLKSQQNEDIVVVAADD 666


>ref|XP_002267435.2| PREDICTED: zinc finger CCCH domain-containing protein 31 [Vitis
           vinifera]
          Length = 1014

 Score =  175 bits (443), Expect = 4e-42
 Identities = 77/147 (52%), Positives = 109/147 (74%), Gaps = 5/147 (3%)
 Frame = -3

Query: 444 IIHPFGEDELFVEYTDCYY---GDRTILTGRKEMEFMAHFCAFQFWQHIFKDKYRIEHLK 274
           I+HPFG++ L  +YTDCY+    D+++LTG++E+ F+A+  AFQFWQ +FKDK+R+E LK
Sbjct: 512 ILHPFGKENLSAQYTDCYFHGDSDKSVLTGKREVAFIANLSAFQFWQRVFKDKHRLERLK 571

Query: 273 QVLMTDNVYPATQLMP--KLEEDWCSFHNLSQSSLHQVSEIYNDILNTIHRSRPKFLSSF 100
           ++L  D +    + +P  K+EE+WC+FH L QSSL+ VSEIY D+LN++HR RPKFL   
Sbjct: 572 KILKLDEMDTTQKQLPLAKIEEEWCTFHMLVQSSLNHVSEIYEDVLNSVHRFRPKFLVKS 631

Query: 99  RGLPPYYDPYEFKHTCLFKSQPNGHSD 19
            G P YY+PYEF+HTCL    P+G +D
Sbjct: 632 DGPPSYYEPYEFEHTCLITQLPDGDTD 658


>emb|CBI36846.3| unnamed protein product [Vitis vinifera]
          Length = 1007

 Score =  175 bits (443), Expect = 4e-42
 Identities = 77/147 (52%), Positives = 109/147 (74%), Gaps = 5/147 (3%)
 Frame = -3

Query: 444 IIHPFGEDELFVEYTDCYY---GDRTILTGRKEMEFMAHFCAFQFWQHIFKDKYRIEHLK 274
           I+HPFG++ L  +YTDCY+    D+++LTG++E+ F+A+  AFQFWQ +FKDK+R+E LK
Sbjct: 512 ILHPFGKENLSAQYTDCYFHGDSDKSVLTGKREVAFIANLSAFQFWQRVFKDKHRLERLK 571

Query: 273 QVLMTDNVYPATQLMP--KLEEDWCSFHNLSQSSLHQVSEIYNDILNTIHRSRPKFLSSF 100
           ++L  D +    + +P  K+EE+WC+FH L QSSL+ VSEIY D+LN++HR RPKFL   
Sbjct: 572 KILKLDEMDTTQKQLPLAKIEEEWCTFHMLVQSSLNHVSEIYEDVLNSVHRFRPKFLVKS 631

Query: 99  RGLPPYYDPYEFKHTCLFKSQPNGHSD 19
            G P YY+PYEF+HTCL    P+G +D
Sbjct: 632 DGPPSYYEPYEFEHTCLITQLPDGDTD 658


>ref|NP_182290.1| zinc finger CCCH domain-containing protein 31 [Arabidopsis
           thaliana] gi|75317978|sp|O22243.2|C3H31_ARATH RecName:
           Full=Zinc finger CCCH domain-containing protein 31;
           Short=AtC3H31 gi|3738282|gb|AAC63624.1| putative
           ATP-dependent RNA helicase A [Arabidopsis thaliana]
           gi|225898609|dbj|BAH30435.1| hypothetical protein
           [Arabidopsis thaliana] gi|330255781|gb|AEC10875.1| zinc
           finger CCCH domain-containing protein 31 [Arabidopsis
           thaliana]
          Length = 1015

 Score =  169 bits (429), Expect = 2e-40
 Identities = 74/139 (53%), Positives = 102/139 (73%), Gaps = 1/139 (0%)
 Frame = -3

Query: 444 IIHPFGEDELFVEYTDCYYG-DRTILTGRKEMEFMAHFCAFQFWQHIFKDKYRIEHLKQV 268
           I HPFG+D LF+EY D Y+G  +TI  GR+EM  MA+FCAFQFWQ +FKDK+R+E+LKQ+
Sbjct: 516 IHHPFGDDSLFLEYVDHYFGGSKTISGGRREMVLMANFCAFQFWQRVFKDKHRLENLKQL 575

Query: 267 LMTDNVYPATQLMPKLEEDWCSFHNLSQSSLHQVSEIYNDILNTIHRSRPKFLSSFRGLP 88
           L  +       + P++E++WC FHN++QSS + VSE+Y D L++ HR RP+F+SS    P
Sbjct: 576 LSKEKDKDLKLMFPEIEKEWCDFHNIAQSSFYHVSELYEDTLSSFHRFRPQFISSSDSQP 635

Query: 87  PYYDPYEFKHTCLFKSQPN 31
            YY+PYEF HTC  + QP+
Sbjct: 636 TYYNPYEFDHTCYIECQPS 654


Top