BLASTX nr result

ID: Glycyrrhiza23_contig00024765 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00024765
         (693 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003601650.1| Small subunit processome component-like prot...   364   8e-99
ref|XP_003552811.1| PREDICTED: U3 small nucleolar RNA-associated...   322   6e-86
emb|CAN75046.1| hypothetical protein VITISV_023142 [Vitis vinifera]   216   3e-54
emb|CBI17281.3| unnamed protein product [Vitis vinifera]              214   2e-53
ref|XP_002518041.1| conserved hypothetical protein [Ricinus comm...   209   5e-52

>ref|XP_003601650.1| Small subunit processome component-like protein [Medicago truncatula]
            gi|355490698|gb|AES71901.1| Small subunit processome
            component-like protein [Medicago truncatula]
          Length = 2733

 Score =  364 bits (935), Expect = 8e-99
 Identities = 194/230 (84%), Positives = 199/230 (86%)
 Frame = -3

Query: 691  DSVIRKRVKALSWFRNVISINKLSEFITEKVFMRHFFNMLFDEKEGKVDHLKNACIETIA 512
            DSVIRKRVKALS FRNVIS NKLSEFITEKVFMR FFNMLFDEKE KVDHLK ACIETIA
Sbjct: 1605 DSVIRKRVKALSLFRNVISTNKLSEFITEKVFMRLFFNMLFDEKEVKVDHLKIACIETIA 1664

Query: 511  SVAGQMGWKSYYSLLIKCFQGASSSPDKQKLFIRLICSILDKFHFSDLSYAEEHNKESLG 332
            SVAGQMGW SYY+LL KCFQGAS SPDKQKLFIRLICSILDKFHFS+LS+ EE       
Sbjct: 1665 SVAGQMGWNSYYALLNKCFQGASRSPDKQKLFIRLICSILDKFHFSELSHTEEPTSV--- 1721

Query: 331  GVSDIGITHTVSSAILGNFGTSNVNTDIQTCLYKVVLPKIQKLLDSDSERVNVNISXXXX 152
            GVSDI IT TVSSA LGNFG S VNTDIQTCLYKVVLPKIQKL+DSDSERVNVNIS    
Sbjct: 1722 GVSDIRITDTVSSASLGNFGASGVNTDIQTCLYKVVLPKIQKLMDSDSERVNVNISLAAL 1781

Query: 151  XXXXXLPGDVMDLYLPTIVHRISNFLKSHLESIRDEARSALATCLKELGL 2
                 LPGD+MD YLPTIVHRISNFLKSHLESIRDEARSALATCLKELGL
Sbjct: 1782 KLLKLLPGDLMDTYLPTIVHRISNFLKSHLESIRDEARSALATCLKELGL 1831


>ref|XP_003552811.1| PREDICTED: U3 small nucleolar RNA-associated protein 20-like [Glycine
            max]
          Length = 2653

 Score =  322 bits (824), Expect = 6e-86
 Identities = 171/230 (74%), Positives = 185/230 (80%)
 Frame = -3

Query: 691  DSVIRKRVKALSWFRNVISINKLSEFITEKVFMRHFFNMLFDEKEGKVDHLKNACIETIA 512
            DSVIRKRVKALSWFRNVIS+NK SEFITEKVFMR FFNML+DEKEGK +H+KNACIETIA
Sbjct: 1598 DSVIRKRVKALSWFRNVISVNKFSEFITEKVFMRLFFNMLYDEKEGKAEHMKNACIETIA 1657

Query: 511  SVAGQMGWKSYYSLLIKCFQGASSSPDKQKLFIRLICSILDKFHFSDLSYAEEHNKESLG 332
            SV+GQMGWKSYY+LLI+CF GAS SPDKQKLFIRLICSILDKFHFS++ + +E  KESL 
Sbjct: 1658 SVSGQMGWKSYYALLIRCFWGASRSPDKQKLFIRLICSILDKFHFSEVPHNKE-PKESL- 1715

Query: 331  GVSDIGITHTVSSAILGNFGTSNVNTDIQTCLYKVVLPKIQKLLDSDSERVNVNISXXXX 152
                                      +IQTCLYKVVLPKIQKLL+SDSE+VNVNIS    
Sbjct: 1716 --------------------------EIQTCLYKVVLPKIQKLLNSDSEKVNVNISLAAL 1749

Query: 151  XXXXXLPGDVMDLYLPTIVHRISNFLKSHLESIRDEARSALATCLKELGL 2
                 LPGDVMDLYLPTIVHRISNFLKSHLESIRDEARSALATCLKELGL
Sbjct: 1750 KLLKLLPGDVMDLYLPTIVHRISNFLKSHLESIRDEARSALATCLKELGL 1799


>emb|CAN75046.1| hypothetical protein VITISV_023142 [Vitis vinifera]
          Length = 2461

 Score =  216 bits (550), Expect = 3e-54
 Identities = 117/255 (45%), Positives = 163/255 (63%), Gaps = 30/255 (11%)
 Frame = -3

Query: 676  KRVKALSWFRNVISINKLSEF------------------------------ITEKVFMRH 587
            +R +ALS FRN I++  L E                               IT KVF+  
Sbjct: 1330 RRSRALSRFRNAINVEGLPEVLFLLPFPYCSTFHTAYNLRESCYVGITFQVITNKVFVPL 1389

Query: 586  FFNMLFDEKEGKVDHLKNACIETIASVAGQMGWKSYYSLLIKCFQGASSSPDKQKLFIRL 407
            F NMLF+ ++GK +H+++AC+ET+AS+ G + WKSYY+LL++CF+  +  PDKQK+ +RL
Sbjct: 1390 FLNMLFNVQDGKGEHIRSACLETLASICGHLEWKSYYALLMRCFREMTVKPDKQKVLLRL 1449

Query: 406  ICSILDKFHFSDLSYAEEHNKESLGGVSDIGITHTVSSAILGNFGTSNVNTDIQTCLYKV 227
            ICSILD+FHF +   ++E  K+S+  VS        SS +  +  +S   T+IQTCL+  
Sbjct: 1450 ICSILDQFHFLETCSSQEA-KDSMDHVSSTCTAEASSSTMFHSCTSSVTITEIQTCLHDT 1508

Query: 226  VLPKIQKLLDSDSERVNVNISXXXXXXXXXLPGDVMDLYLPTIVHRISNFLKSHLESIRD 47
            V P+IQKLL+SDS++VNVNIS         LPGD+M+  L +I+HRISNFL++ LES+RD
Sbjct: 1509 VFPRIQKLLNSDSDKVNVNISLAALKLLKLLPGDIMESQLSSIIHRISNFLRNRLESVRD 1568

Query: 46   EARSALATCLKELGL 2
            +ARSALA CLKELGL
Sbjct: 1569 DARSALAACLKELGL 1583


>emb|CBI17281.3| unnamed protein product [Vitis vinifera]
          Length = 2629

 Score =  214 bits (544), Expect = 2e-53
 Identities = 111/225 (49%), Positives = 153/225 (68%)
 Frame = -3

Query: 676  KRVKALSWFRNVISINKLSEFITEKVFMRHFFNMLFDEKEGKVDHLKNACIETIASVAGQ 497
            +R +ALS FRN I++  L E IT KVF+  F NMLF+ ++GK +H+++AC+ET+AS+ G 
Sbjct: 1579 RRSRALSRFRNAINVEGLPEVITNKVFVPLFLNMLFNVQDGKGEHIRSACLETLASICGH 1638

Query: 496  MGWKSYYSLLIKCFQGASSSPDKQKLFIRLICSILDKFHFSDLSYAEEHNKESLGGVSDI 317
            + WKSYY+LL++CF+  +  PDKQK+ +RLICSILD+FHF +   ++E  K+S+      
Sbjct: 1639 LEWKSYYALLMRCFREMTVKPDKQKVLLRLICSILDQFHFLETCSSQE-AKDSM------ 1691

Query: 316  GITHTVSSAILGNFGTSNVNTDIQTCLYKVVLPKIQKLLDSDSERVNVNISXXXXXXXXX 137
                                  IQTCL+  V P+IQKLL+SDS++VNVNIS         
Sbjct: 1692 --------------------DHIQTCLHDTVFPRIQKLLNSDSDKVNVNISLAALKLLKL 1731

Query: 136  LPGDVMDLYLPTIVHRISNFLKSHLESIRDEARSALATCLKELGL 2
            LPGD+M+  L +I+HRISNFL++ LES+RD+ARSALA CLKELGL
Sbjct: 1732 LPGDIMESQLSSIIHRISNFLRNRLESVRDDARSALAACLKELGL 1776


>ref|XP_002518041.1| conserved hypothetical protein [Ricinus communis]
            gi|223542637|gb|EEF44174.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 2535

 Score =  209 bits (531), Expect = 5e-52
 Identities = 114/226 (50%), Positives = 150/226 (66%), Gaps = 1/226 (0%)
 Frame = -3

Query: 676  KRVKALSWFRNVISINKLSEFITEKVFMRHFFNMLFDEKEGKVDHLKNACIETIASVAGQ 497
            +R KALS F NVI+   +SE I  KVF+  FF ML D + GK +++K+AC+E +AS+A Q
Sbjct: 1499 RRAKALSRFSNVINKTNMSEGIMNKVFVPLFFKMLLDVQGGKGENIKSACLEALASIASQ 1558

Query: 496  MGWKSYYSLLIKCFQGASSSPDKQKLFIRLICSILDKFHFSDLSYAEEHNKESLGGVSDI 317
            M WKSYY+LL +CF     + DKQK+ +RL+CS+LD+FHFS  S  E             
Sbjct: 1559 MKWKSYYALLTRCFHEMKMNLDKQKVLLRLVCSMLDQFHFSQNSSCE----------FGT 1608

Query: 316  GITHTVSSAILGNFGTSN-VNTDIQTCLYKVVLPKIQKLLDSDSERVNVNISXXXXXXXX 140
             I  T S A L    +++ V  +IQ CL+K VLP +QKLLD DS++VNVN++        
Sbjct: 1609 DIMETGSLATLRKCDSNSVVAAEIQACLHKTVLPMMQKLLDFDSDKVNVNVNVAVLKVLK 1668

Query: 139  XLPGDVMDLYLPTIVHRISNFLKSHLESIRDEARSALATCLKELGL 2
             LPGD+MD  LP+I+HRI+N LK+ +ESIRDEAR ALA CLKELGL
Sbjct: 1669 LLPGDIMDSQLPSIIHRIANHLKNRMESIRDEARLALAACLKELGL 1714


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