BLASTX nr result

ID: Glycyrrhiza23_contig00024653 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00024653
         (941 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002328082.1| predicted protein [Populus trichocarpa] gi|1...   137   5e-30
ref|XP_002271178.1| PREDICTED: recQ-mediated genome instability ...   134   2e-29
ref|NP_172315.1| uncharacterized protein [Arabidopsis thaliana] ...   131   3e-28
ref|XP_003538189.1| PREDICTED: recQ-mediated genome instability ...   129   1e-27
ref|XP_002889690.1| hypothetical protein ARALYDRAFT_470900 [Arab...   127   3e-27

>ref|XP_002328082.1| predicted protein [Populus trichocarpa] gi|118483555|gb|ABK93675.1|
           unknown [Populus trichocarpa]
           gi|222837597|gb|EEE75962.1| predicted protein [Populus
           trichocarpa]
          Length = 134

 Score =  137 bits (344), Expect = 5e-30
 Identities = 77/136 (56%), Positives = 81/136 (59%)
 Frame = -2

Query: 913 MDYSXXXXXXXXXXXKHAREVPSQNSFTLGGILFQRAWLQXXXXXXXXXXXXXXXXXXXG 734
           MDYS           K A E PSQN+ TLGGILFQRAWLQ                    
Sbjct: 1   MDYSLAALKLLCVQLKDASETPSQNALTLGGILFQRAWLQGILVSNDGDGRLLLDDG--- 57

Query: 733 TGVIELSLSGDFRLRQWKIXXXXXXXXXXVARAGEPPMIKVHKIVDLSSSPDREAMWYLE 554
           TGVIEL LS DFRLR W              R GE PMIKVHK+VDLS+ PDREAMWYLE
Sbjct: 58  TGVIELCLSPDFRLRHWDSGMYVMVVGGYFVRHGETPMIKVHKMVDLSAFPDREAMWYLE 117

Query: 553 VMEAYKLFYQPLVEEF 506
           VMEAYKLFYQPL+EEF
Sbjct: 118 VMEAYKLFYQPLIEEF 133


>ref|XP_002271178.1| PREDICTED: recQ-mediated genome instability protein 2 [Vitis
           vinifera] gi|297734866|emb|CBI17100.3| unnamed protein
           product [Vitis vinifera]
          Length = 134

 Score =  134 bits (338), Expect = 2e-29
 Identities = 73/135 (54%), Positives = 82/135 (60%)
 Frame = -2

Query: 913 MDYSXXXXXXXXXXXKHAREVPSQNSFTLGGILFQRAWLQXXXXXXXXXXXXXXXXXXXG 734
           MDYS           + A+E  SQN+FTLGG+LFQRAWLQ                    
Sbjct: 1   MDYSLAALKVMCGQLRKAKETTSQNAFTLGGVLFQRAWLQGVLVSVSDDAQGRFVLDDG- 59

Query: 733 TGVIELSLSGDFRLRQWKIXXXXXXXXXXVARAGEPPMIKVHKIVDLSSSPDREAMWYLE 554
           TGVI LSLSGDF  R WKI            R+GEPPMIKVHKIVDLS  PDRE+MWYLE
Sbjct: 60  TGVIHLSLSGDFLHRNWKIGMYVMVVGGYFVRSGEPPMIKVHKIVDLSPFPDRESMWYLE 119

Query: 553 VMEAYKLFYQPLVEE 509
           V+EA++LFYQPL EE
Sbjct: 120 VIEAFRLFYQPLYEE 134


>ref|NP_172315.1| uncharacterized protein [Arabidopsis thaliana]
           gi|20258784|gb|AAM13914.1| unknown protein [Arabidopsis
           thaliana] gi|332190163|gb|AEE28284.1| uncharacterized
           protein [Arabidopsis thaliana]
          Length = 137

 Score =  131 bits (329), Expect = 3e-28
 Identities = 66/137 (48%), Positives = 84/137 (61%)
 Frame = -2

Query: 913 MDYSXXXXXXXXXXXKHAREVPSQNSFTLGGILFQRAWLQXXXXXXXXXXXXXXXXXXXG 734
           MDYS           + A+  PSQN+ +LGG+LFQRAWLQ                   G
Sbjct: 1   MDYSLAAVKMLCSQLRDAKPTPSQNAASLGGVLFQRAWLQGVLVPFSGGGGDNCLVLDDG 60

Query: 733 TGVIELSLSGDFRLRQWKIXXXXXXXXXXVARAGEPPMIKVHKIVDLSSSPDREAMWYLE 554
           TG++EL L+ DF LRQWK             R G+ P++KVHK+VDLS SPDREAMWYLE
Sbjct: 61  TGLLELGLTNDFALRQWKSGMYVMVVGVYQVRTGQIPLLKVHKMVDLSVSPDREAMWYLE 120

Query: 553 VMEAYKLFYQPLVEEFT 503
           VM+AY+LFY+PL++EF+
Sbjct: 121 VMDAYRLFYEPLIQEFS 137


>ref|XP_003538189.1| PREDICTED: recQ-mediated genome instability protein 2-like [Glycine
           max]
          Length = 142

 Score =  129 bits (324), Expect = 1e-27
 Identities = 76/145 (52%), Positives = 85/145 (58%), Gaps = 8/145 (5%)
 Frame = -2

Query: 913 MDYSXXXXXXXXXXXKHAREVP--------SQNSFTLGGILFQRAWLQXXXXXXXXXXXX 758
           MDY            K AREV         SQ+SFTLGG+LFQR WLQ            
Sbjct: 1   MDYDLAALKLFCSQLKQAREVAMPCQTQSQSQSSFTLGGLLFQRPWLQGVLVSASDAGSL 60

Query: 757 XXXXXXXGTGVIELSLSGDFRLRQWKIXXXXXXXXXXVARAGEPPMIKVHKIVDLSSSPD 578
                   T ++ELSL+ +FR R WK+           AR G+ PMIKVHKIVDLSSSP+
Sbjct: 61  LLDDG---TDLVELSLNSEFRHRPWKLGMYVMVVGGYAARPGKLPMIKVHKIVDLSSSPN 117

Query: 577 REAMWYLEVMEAYKLFYQPLVEEFT 503
           REAMWYLEVMEAYKLFYQPLVEEFT
Sbjct: 118 REAMWYLEVMEAYKLFYQPLVEEFT 142


>ref|XP_002889690.1| hypothetical protein ARALYDRAFT_470900 [Arabidopsis lyrata subsp.
           lyrata] gi|297335532|gb|EFH65949.1| hypothetical protein
           ARALYDRAFT_470900 [Arabidopsis lyrata subsp. lyrata]
          Length = 136

 Score =  127 bits (320), Expect = 3e-27
 Identities = 66/137 (48%), Positives = 82/137 (59%)
 Frame = -2

Query: 913 MDYSXXXXXXXXXXXKHAREVPSQNSFTLGGILFQRAWLQXXXXXXXXXXXXXXXXXXXG 734
           MDYS           + A+  PSQN+  LGG+LFQRAWLQ                    
Sbjct: 1   MDYSLAAVKMLCSQLRDAKPTPSQNATALGGVLFQRAWLQGVLVPISGGGDNHMVLDDG- 59

Query: 733 TGVIELSLSGDFRLRQWKIXXXXXXXXXXVARAGEPPMIKVHKIVDLSSSPDREAMWYLE 554
           TG++EL LS DF LRQWK             R G+ P++KVHK+VDLS SPDREAMWYLE
Sbjct: 60  TGLVELGLSSDFALRQWKSGMYVMVVGVYHIRTGDIPLLKVHKMVDLSVSPDREAMWYLE 119

Query: 553 VMEAYKLFYQPLVEEFT 503
           VM+AY+LFY+PL++EF+
Sbjct: 120 VMDAYRLFYEPLIQEFS 136


Top