BLASTX nr result

ID: Glycyrrhiza23_contig00024134 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00024134
         (737 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003549030.1| PREDICTED: probable RNA-binding protein 18-l...   276   3e-72
ref|XP_003533164.1| PREDICTED: probable RNA-binding protein 18-l...   271   1e-70
ref|XP_003589418.1| Polyadenylate-binding protein [Medicago trun...   264   2e-68
gb|AFK40282.1| unknown [Medicago truncatula]                          263   2e-68
ref|XP_003636251.1| Polyadenylate-binding protein [Medicago trun...   259   4e-67

>ref|XP_003549030.1| PREDICTED: probable RNA-binding protein 18-like [Glycine max]
          Length = 212

 Score =  276 bits (706), Expect = 3e-72
 Identities = 141/160 (88%), Positives = 150/160 (93%), Gaps = 1/160 (0%)
 Frame = +3

Query: 90  VMDPNGSIDDKSENRLYIGNLDLRITEAALLKMFSPFGKIVSEDFLWHTRGPRRGEPRGF 269
           VMDPN   DD+ E+RLYIGNLDLRITEAALLKMFSP+GKI+SEDFLWHTRGP+RGEPRGF
Sbjct: 56  VMDPN---DDRGESRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGF 112

Query: 270 AFIQYSTKEEAELAKEKMHGRLACGRPLVVRLASEKYMLETACTSTKAAGEGNKMHLTGG 449
           AFIQYSTKEEAELAKEKMHGRLACGRPL VRLA EK+MLETA  STKAAGEG+KMHLTGG
Sbjct: 113 AFIQYSTKEEAELAKEKMHGRLACGRPLFVRLAGEKFMLETADNSTKAAGEGHKMHLTGG 172

Query: 450 GG-MGQTSRSAKIAAIKNKLKSLEEENSRSKKQKQSDNIS 566
           GG MGQTSR AKIAAIKNKLKSLEEE+SRSKKQK+SDNIS
Sbjct: 173 GGAMGQTSRHAKIAAIKNKLKSLEEESSRSKKQKRSDNIS 212


>ref|XP_003533164.1| PREDICTED: probable RNA-binding protein 18-like [Glycine max]
          Length = 157

 Score =  271 bits (692), Expect = 1e-70
 Identities = 138/160 (86%), Positives = 149/160 (93%), Gaps = 1/160 (0%)
 Frame = +3

Query: 90  VMDPNGSIDDKSENRLYIGNLDLRITEAALLKMFSPFGKIVSEDFLWHTRGPRRGEPRGF 269
           + DPN   DD+ E+RLYIGNLDLRITEAALLKMFSP+GKI+SEDFLWHTRGP+RGEPRGF
Sbjct: 1   MQDPN---DDRGESRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGF 57

Query: 270 AFIQYSTKEEAELAKEKMHGRLACGRPLVVRLASEKYMLETACTSTKAAGEGNKMHLTGG 449
           AFIQYSTKEEAELAKEKMHGRLAC RPLVVRLA +K MLET  +STKAAGEG+KMHLTGG
Sbjct: 58  AFIQYSTKEEAELAKEKMHGRLACSRPLVVRLAGDKCMLETVDSSTKAAGEGHKMHLTGG 117

Query: 450 GG-MGQTSRSAKIAAIKNKLKSLEEENSRSKKQKQSDNIS 566
           GG MGQTSRSAKIAAIKNKLKSLEEE+SR+KKQKQSDNIS
Sbjct: 118 GGAMGQTSRSAKIAAIKNKLKSLEEESSRTKKQKQSDNIS 157


>ref|XP_003589418.1| Polyadenylate-binding protein [Medicago truncatula]
           gi|357473041|ref|XP_003606805.1| Polyadenylate-binding
           protein [Medicago truncatula]
           gi|355478466|gb|AES59669.1| Polyadenylate-binding
           protein [Medicago truncatula]
           gi|355507860|gb|AES89002.1| Polyadenylate-binding
           protein [Medicago truncatula]
          Length = 157

 Score =  264 bits (674), Expect = 2e-68
 Identities = 131/158 (82%), Positives = 145/158 (91%)
 Frame = +3

Query: 93  MDPNGSIDDKSENRLYIGNLDLRITEAALLKMFSPFGKIVSEDFLWHTRGPRRGEPRGFA 272
           MD NGS+DDK ENRLY+GNLDLRITEA LLKMFSP+GKI+SEDFLWHTRGP+RGEPRGFA
Sbjct: 1   MDLNGSVDDKCENRLYVGNLDLRITEATLLKMFSPYGKIMSEDFLWHTRGPKRGEPRGFA 60

Query: 273 FIQYSTKEEAELAKEKMHGRLACGRPLVVRLASEKYMLETACTSTKAAGEGNKMHLTGGG 452
           FIQYSTKEEA LAKEKMHGRLAC RPLVVRLA E+Y LE A +STKA  EG+K+HLT GG
Sbjct: 61  FIQYSTKEEAILAKEKMHGRLACSRPLVVRLAGERYALEKADSSTKAVSEGHKLHLT-GG 119

Query: 453 GMGQTSRSAKIAAIKNKLKSLEEENSRSKKQKQSDNIS 566
           G+GQTSRSAKIAAIKNKLKSLEE+NS++KKQK SDN+S
Sbjct: 120 GIGQTSRSAKIAAIKNKLKSLEEDNSKTKKQKLSDNVS 157


>gb|AFK40282.1| unknown [Medicago truncatula]
          Length = 157

 Score =  263 bits (673), Expect = 2e-68
 Identities = 130/158 (82%), Positives = 145/158 (91%)
 Frame = +3

Query: 93  MDPNGSIDDKSENRLYIGNLDLRITEAALLKMFSPFGKIVSEDFLWHTRGPRRGEPRGFA 272
           MD NGS+DDK ENRLY+GNLDLRITEA LLKMFSP+GKI+SEDFLWHTRGP+RGEPRGFA
Sbjct: 1   MDLNGSVDDKCENRLYVGNLDLRITEATLLKMFSPYGKIMSEDFLWHTRGPKRGEPRGFA 60

Query: 273 FIQYSTKEEAELAKEKMHGRLACGRPLVVRLASEKYMLETACTSTKAAGEGNKMHLTGGG 452
           FIQYSTKEEA LAKEKMHGRLAC RPLV+RLA E+Y LE A +STKA  EG+K+HLT GG
Sbjct: 61  FIQYSTKEEAILAKEKMHGRLACSRPLVIRLAGERYALEKADSSTKAVSEGHKLHLT-GG 119

Query: 453 GMGQTSRSAKIAAIKNKLKSLEEENSRSKKQKQSDNIS 566
           G+GQTSRSAKIAAIKNKLKSLEE+NS++KKQK SDN+S
Sbjct: 120 GIGQTSRSAKIAAIKNKLKSLEEDNSKTKKQKLSDNVS 157


>ref|XP_003636251.1| Polyadenylate-binding protein [Medicago truncatula]
           gi|355502186|gb|AES83389.1| Polyadenylate-binding
           protein [Medicago truncatula]
          Length = 157

 Score =  259 bits (662), Expect = 4e-67
 Identities = 130/158 (82%), Positives = 143/158 (90%)
 Frame = +3

Query: 93  MDPNGSIDDKSENRLYIGNLDLRITEAALLKMFSPFGKIVSEDFLWHTRGPRRGEPRGFA 272
           MDPNGS+DDK ENRL +GNLDLRITEAALLKMFSP+GKIVS D LWHTRGP+RGEPRGFA
Sbjct: 1   MDPNGSVDDKCENRLCVGNLDLRITEAALLKMFSPYGKIVSVDLLWHTRGPKRGEPRGFA 60

Query: 273 FIQYSTKEEAELAKEKMHGRLACGRPLVVRLASEKYMLETACTSTKAAGEGNKMHLTGGG 452
           FI YSTKEEA LA+EKMHGRLAC RPLVVRLA E+Y LE A +STKA  EG+K+HLT GG
Sbjct: 61  FIHYSTKEEAILAREKMHGRLACSRPLVVRLAGERYALEKADSSTKAVSEGHKLHLT-GG 119

Query: 453 GMGQTSRSAKIAAIKNKLKSLEEENSRSKKQKQSDNIS 566
           G+GQTSRSAKIAAIKNKLKSLEE+NS++KKQK SDNIS
Sbjct: 120 GIGQTSRSAKIAAIKNKLKSLEEDNSKTKKQKLSDNIS 157


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