BLASTX nr result

ID: Glycyrrhiza23_contig00024068 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00024068
         (657 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003588306.1| Ribosomal protein S3 [Medicago truncatula] g...    86   8e-15
ref|XP_002535311.1| conserved hypothetical protein [Ricinus comm...    50   1e-10
ref|XP_002531802.1| conserved hypothetical protein [Ricinus comm...    60   5e-07

>ref|XP_003588306.1| Ribosomal protein S3 [Medicago truncatula]
           gi|355477354|gb|AES58557.1| Ribosomal protein S3
           [Medicago truncatula]
          Length = 306

 Score = 85.5 bits (210), Expect = 8e-15
 Identities = 46/64 (71%), Positives = 46/64 (71%)
 Frame = +1

Query: 448 MGQRIKRFYFVSRDSPQVGFESRVMGDYPARFGEHF*SALVNGSPSIKQERSGYSHGGVT 627
           MGQRIKRF FVSRDSPQVGFESRVMGDYPARFGE                 SGYSHGGVT
Sbjct: 1   MGQRIKRFDFVSRDSPQVGFESRVMGDYPARFGE-----------------SGYSHGGVT 43

Query: 628 IDSI 639
           IDSI
Sbjct: 44  IDSI 47


>ref|XP_002535311.1| conserved hypothetical protein [Ricinus communis]
           gi|223523476|gb|EEF27072.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 63

 Score = 49.7 bits (117), Expect(2) = 1e-10
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = -1

Query: 396 RDRLSFKPLSFGSNKSSPLGRFAQV 322
           RDRLSFKPLSFGS+KSSP GRFAQV
Sbjct: 10  RDRLSFKPLSFGSDKSSPFGRFAQV 34



 Score = 42.4 bits (98), Expect(2) = 1e-10
 Identities = 20/30 (66%), Positives = 24/30 (80%), Gaps = 2/30 (6%)
 Frame = -2

Query: 329 LRWSSLILS--NVQSCSGLKKEHRPSALNE 246
           +RWSS  +   NV+SCSGL+KEHRPS LNE
Sbjct: 34  VRWSSRSVGFPNVKSCSGLRKEHRPSTLNE 63


>ref|XP_002531802.1| conserved hypothetical protein [Ricinus communis]
           gi|223528568|gb|EEF30590.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 72

 Score = 59.7 bits (143), Expect = 5e-07
 Identities = 34/59 (57%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
 Frame = -1

Query: 591 LDRGASIHQRRLKVLSEPCWIVTHHTALKPNLW*-IPGDKVKALDPLPHTLRCFSPPIK 418
           L RG SI Q RLKVL EPC I+T++T           GD VKALDPLPHTL+  S PIK
Sbjct: 14  LTRGPSIQQCRLKVLCEPCRIITYYTTHSSQTCDGSQGDNVKALDPLPHTLKGSSTPIK 72


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