BLASTX nr result

ID: Glycyrrhiza23_contig00023652 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00023652
         (518 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003625502.1| Nuclear pore complex protein Nup205 [Medicag...   306   1e-81
ref|XP_003525930.1| PREDICTED: nuclear pore complex protein Nup2...   297   5e-79
ref|XP_003633105.1| PREDICTED: nuclear pore complex protein Nup2...   251   4e-65
emb|CBI28192.3| unnamed protein product [Vitis vinifera]              251   4e-65
ref|XP_004159416.1| PREDICTED: nuclear pore complex protein Nup2...   223   1e-56

>ref|XP_003625502.1| Nuclear pore complex protein Nup205 [Medicago truncatula]
           gi|355500517|gb|AES81720.1| Nuclear pore complex protein
           Nup205 [Medicago truncatula]
          Length = 2047

 Score =  306 bits (783), Expect = 1e-81
 Identities = 156/172 (90%), Positives = 162/172 (94%)
 Frame = -1

Query: 518 LILGHCLVLSVLVVRTSPKDVKDLFYVLKDSVSGVSESNTTIKHQITFSLLFALVIAFVS 339
           LILGHCLVLSVL+VRTSPKDVKDLF VLKDS S VS+SNT IKHQITFSLLFALVIAFVS
Sbjct: 319 LILGHCLVLSVLIVRTSPKDVKDLFSVLKDSASEVSQSNTAIKHQITFSLLFALVIAFVS 378

Query: 338 DGLGTVPDKASVLSSDTSFRHEFHALVMATGNDPIVEGFTGGIRLAWVVHLMLIQDVVAA 159
           DGL TVPDKASVLSS+TSFRHEFH LVMATGNDPIVEGFTGGIRLAWVVHLMLIQD VAA
Sbjct: 379 DGLSTVPDKASVLSSNTSFRHEFHELVMATGNDPIVEGFTGGIRLAWVVHLMLIQDGVAA 438

Query: 158 RETVSSGSSNEMGYLSQCLEVIFSNNVFQFLLDKVLRTAAYQTEDEDMIYMY 3
           RETVSS SSNEM YLSQCLE +FSNNVFQFLL+KVLRTAA+QTEDEDMIYMY
Sbjct: 439 RETVSSASSNEMSYLSQCLETVFSNNVFQFLLEKVLRTAAFQTEDEDMIYMY 490


>ref|XP_003525930.1| PREDICTED: nuclear pore complex protein Nup205-like [Glycine max]
          Length = 1931

 Score =  297 bits (761), Expect = 5e-79
 Identities = 149/172 (86%), Positives = 158/172 (91%)
 Frame = -1

Query: 518 LILGHCLVLSVLVVRTSPKDVKDLFYVLKDSVSGVSESNTTIKHQITFSLLFALVIAFVS 339
           LILGHCLVLS+LVVRT PKD+KD+F VLKDS S VSESN T+KHQITF LLFALVIAFVS
Sbjct: 214 LILGHCLVLSILVVRTCPKDIKDIFSVLKDSASEVSESNATVKHQITFCLLFALVIAFVS 273

Query: 338 DGLGTVPDKASVLSSDTSFRHEFHALVMATGNDPIVEGFTGGIRLAWVVHLMLIQDVVAA 159
           DGL TVPDKASVLSS+TSFRHEFH LVM TGNDP VEGF GGIRLAWVVHLMLIQD V A
Sbjct: 274 DGLSTVPDKASVLSSNTSFRHEFHELVMTTGNDPHVEGFVGGIRLAWVVHLMLIQDGVPA 333

Query: 158 RETVSSGSSNEMGYLSQCLEVIFSNNVFQFLLDKVLRTAAYQTEDEDMIYMY 3
           RET+SSGSSNE+GYLSQCLE IFSNNVFQFLLDKVLRTA++QTEDEDMIYMY
Sbjct: 334 RETISSGSSNELGYLSQCLEAIFSNNVFQFLLDKVLRTASFQTEDEDMIYMY 385


>ref|XP_003633105.1| PREDICTED: nuclear pore complex protein Nup205-like [Vitis
           vinifera]
          Length = 1934

 Score =  251 bits (641), Expect = 4e-65
 Identities = 124/172 (72%), Positives = 143/172 (83%)
 Frame = -1

Query: 518 LILGHCLVLSVLVVRTSPKDVKDLFYVLKDSVSGVSESNTTIKHQITFSLLFALVIAFVS 339
           LILGHCLVLSVLVVRTSPKDVKDLF  LKD  + ++ S+ TIK+QITFS+LF+LVIAF+S
Sbjct: 214 LILGHCLVLSVLVVRTSPKDVKDLFSTLKDCAAELNGSSDTIKYQITFSILFSLVIAFIS 273

Query: 338 DGLGTVPDKASVLSSDTSFRHEFHALVMATGNDPIVEGFTGGIRLAWVVHLMLIQDVVAA 159
           D LGTVPDKASVL  D +FR EF  +V+A+GNDPI EGF   IRLAW  HLML+QD   A
Sbjct: 274 DALGTVPDKASVLCRDATFRREFQEIVIASGNDPIAEGFVDVIRLAWAAHLMLVQDATVA 333

Query: 158 RETVSSGSSNEMGYLSQCLEVIFSNNVFQFLLDKVLRTAAYQTEDEDMIYMY 3
            ETVSS SSN++GY+  CLEVIFSNNVFQFLLDK L+TAAYQ +DEDMIY+Y
Sbjct: 334 TETVSSASSNDLGYICSCLEVIFSNNVFQFLLDKALQTAAYQNDDEDMIYVY 385


>emb|CBI28192.3| unnamed protein product [Vitis vinifera]
          Length = 1889

 Score =  251 bits (641), Expect = 4e-65
 Identities = 124/172 (72%), Positives = 143/172 (83%)
 Frame = -1

Query: 518 LILGHCLVLSVLVVRTSPKDVKDLFYVLKDSVSGVSESNTTIKHQITFSLLFALVIAFVS 339
           LILGHCLVLSVLVVRTSPKDVKDLF  LKD  + ++ S+ TIK+QITFS+LF+LVIAF+S
Sbjct: 214 LILGHCLVLSVLVVRTSPKDVKDLFSTLKDCAAELNGSSDTIKYQITFSILFSLVIAFIS 273

Query: 338 DGLGTVPDKASVLSSDTSFRHEFHALVMATGNDPIVEGFTGGIRLAWVVHLMLIQDVVAA 159
           D LGTVPDKASVL  D +FR EF  +V+A+GNDPI EGF   IRLAW  HLML+QD   A
Sbjct: 274 DALGTVPDKASVLCRDATFRREFQEIVIASGNDPIAEGFVDVIRLAWAAHLMLVQDATVA 333

Query: 158 RETVSSGSSNEMGYLSQCLEVIFSNNVFQFLLDKVLRTAAYQTEDEDMIYMY 3
            ETVSS SSN++GY+  CLEVIFSNNVFQFLLDK L+TAAYQ +DEDMIY+Y
Sbjct: 334 TETVSSASSNDLGYICSCLEVIFSNNVFQFLLDKALQTAAYQNDDEDMIYVY 385


>ref|XP_004159416.1| PREDICTED: nuclear pore complex protein Nup205-like [Cucumis
           sativus]
          Length = 1849

 Score =  223 bits (569), Expect = 1e-56
 Identities = 108/172 (62%), Positives = 134/172 (77%)
 Frame = -1

Query: 518 LILGHCLVLSVLVVRTSPKDVKDLFYVLKDSVSGVSESNTTIKHQITFSLLFALVIAFVS 339
           LI+GHCLVLS+LVVR  PKD +DLF VLKD  + ++E+   IK QI FSLLF+++IAFVS
Sbjct: 214 LIIGHCLVLSILVVRIGPKDARDLFSVLKDCAAELNETKAPIKLQIVFSLLFSIIIAFVS 273

Query: 338 DGLGTVPDKASVLSSDTSFRHEFHALVMATGNDPIVEGFTGGIRLAWVVHLMLIQDVVAA 159
           D L  VP+KAS+LSSD SFR+EF   VMA+GNDP VEGF   +R AW VHL+LI D+V A
Sbjct: 274 DALSAVPNKASILSSDASFRNEFQDNVMASGNDPTVEGFVDAVRFAWTVHLLLIHDMVDA 333

Query: 158 RETVSSGSSNEMGYLSQCLEVIFSNNVFQFLLDKVLRTAAYQTEDEDMIYMY 3
           RE + + S  ++ YL  CLEVIFS+N FQFLL +V++TAAYQ +DEDMIYMY
Sbjct: 334 REAIPNASPKDLDYLQSCLEVIFSHNAFQFLLQEVIQTAAYQNDDEDMIYMY 385


Top