BLASTX nr result

ID: Glycyrrhiza23_contig00022875 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00022875
         (678 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003539117.1| PREDICTED: transcription regulatory protein ...   188   7e-46
gb|AFK39819.1| unknown [Lotus japonicus]                              163   3e-38
ref|XP_003610678.1| Chromatin remodeling complex subunit [Medica...   162   6e-38
ref|XP_003535660.1| PREDICTED: transcription regulatory protein ...   147   2e-33
ref|XP_003592449.1| Chromatin remodeling complex subunit [Medica...   143   3e-32

>ref|XP_003539117.1| PREDICTED: transcription regulatory protein SNF2-like [Glycine max]
          Length = 1063

 Score =  188 bits (478), Expect = 7e-46
 Identities = 100/159 (62%), Positives = 109/159 (68%)
 Frame = +3

Query: 3    RKRKEVVYADTLSDLQWTRAVENGQDISKLSAKGKRRDRLPVDSHAQASEDIGAXXXXXX 182
            RKR EVVYADTLSDLQW +AVENGQDISKLS KGKRRD LPVD+HAQAS+D+G       
Sbjct: 932  RKRNEVVYADTLSDLQWMKAVENGQDISKLSVKGKRRDHLPVDNHAQASDDMGTEERLFR 991

Query: 183  XXXXXXXXXDTFNVTPASKRLKHDEINSQKREKEDVRFSGSNEHMFSWNTHRKKRSSYIG 362
                     DTF+VTPASKRLK +EINSQK E EDV   G NEH+FSWNT RKKRS Y+G
Sbjct: 992  SE-------DTFDVTPASKRLKPEEINSQKHENEDVSVGGLNEHIFSWNTRRKKRSGYLG 1044

Query: 363  QGSLSDNRGQNSNGXXXXXXXXXXXXXXXXXXNGRANWN 479
            QGS SD+RGQNS                    NGRANWN
Sbjct: 1045 QGSFSDSRGQNS--------------------NGRANWN 1063


>gb|AFK39819.1| unknown [Lotus japonicus]
          Length = 220

 Score =  163 bits (412), Expect = 3e-38
 Identities = 87/135 (64%), Positives = 98/135 (72%), Gaps = 1/135 (0%)
 Frame = +3

Query: 3   RKRKEVVYADTLSDLQWTRAVENGQDISKLSAKGKRRDRLPVDSHAQASEDIGAXXXXXX 182
           RKRKEVVYADTLSDLQW +AVE+ QD+ KLS K KRRD     S AQAS+DIGA      
Sbjct: 86  RKRKEVVYADTLSDLQWMKAVESAQDMPKLSVKRKRRD-----SDAQASDDIGAEERLLE 140

Query: 183 XXXXXXXXX-DTFNVTPASKRLKHDEINSQKREKEDVRFSGSNEHMFSWNTHRKKRSSYI 359
                     DTFNVTPASKR KH+E+NSQ  E EDVR  G NE++FSWNT +KKRSSY+
Sbjct: 141 LRNGSERSSEDTFNVTPASKRPKHEELNSQNHENEDVRVGGLNENVFSWNTKKKKRSSYL 200

Query: 360 GQGSLSDNRGQNSNG 404
            QGSLSD +GQNSNG
Sbjct: 201 SQGSLSDTKGQNSNG 215


>ref|XP_003610678.1| Chromatin remodeling complex subunit [Medicago truncatula]
            gi|355512013|gb|AES93636.1| Chromatin remodeling complex
            subunit [Medicago truncatula]
          Length = 1063

 Score =  162 bits (410), Expect = 6e-38
 Identities = 84/137 (61%), Positives = 97/137 (70%), Gaps = 3/137 (2%)
 Frame = +3

Query: 3    RKRKEVVYADTLSDLQWTRAVENGQDISKLSAKGKRRDRLPVDSHAQASEDIGAXXXXXX 182
            R RKEVVYADTLSDLQW +AVE+G D+S  SAKGKR+ RLP+DSHAQ S+D GA      
Sbjct: 923  RPRKEVVYADTLSDLQWMKAVESGHDVSNSSAKGKRKIRLPIDSHAQTSDDTGAEERLLE 982

Query: 183  XXXXXXXXX---DTFNVTPASKRLKHDEINSQKREKEDVRFSGSNEHMFSWNTHRKKRSS 353
                        DTF  TPASKR KH+E++S K E +D   SG NEH+FSWNT RKKRSS
Sbjct: 983  LSNTMANERSNEDTFYGTPASKRFKHEEVSSHKHEIKDTGVSGLNEHVFSWNTIRKKRSS 1042

Query: 354  YIGQGSLSDNRGQNSNG 404
            Y  QGSLSD +GQ+SNG
Sbjct: 1043 YPSQGSLSDTKGQSSNG 1059


>ref|XP_003535660.1| PREDICTED: transcription regulatory protein SNF2-like [Glycine max]
          Length = 1072

 Score =  147 bits (371), Expect = 2e-33
 Identities = 85/164 (51%), Positives = 98/164 (59%), Gaps = 5/164 (3%)
 Frame = +3

Query: 3    RKRKEVVYADTLSDLQWTRAVENGQDISKLSAKGKRRDRLPVDSHAQASEDIGA-----X 167
            RKRKEVVYADTLSDLQW +AVENG+DISK S KGKRRD    DS AQAS++ GA      
Sbjct: 930  RKRKEVVYADTLSDLQWMKAVENGEDISKFSGKGKRRDHRSSDSVAQASDNTGAEESLEL 989

Query: 168  XXXXXXXXXXXXXXDTFNVTPASKRLKHDEINSQKREKEDVRFSGSNEHMFSWNTHRKKR 347
                          D+F+VTP +KR K +  N  K   EDV  SG N H+ SWNTH+KKR
Sbjct: 990  RTESVPMENERTSEDSFHVTPPAKRFKPEGTNFLKHTYEDVG-SGLNRHLLSWNTHKKKR 1048

Query: 348  SSYIGQGSLSDNRGQNSNGXXXXXXXXXXXXXXXXXXNGRANWN 479
            SS++GQGSLSD RG +S                    NGRANWN
Sbjct: 1049 SSFLGQGSLSDTRGHSS--------------------NGRANWN 1072


>ref|XP_003592449.1| Chromatin remodeling complex subunit [Medicago truncatula]
            gi|355481497|gb|AES62700.1| Chromatin remodeling complex
            subunit [Medicago truncatula]
          Length = 1083

 Score =  143 bits (361), Expect = 3e-32
 Identities = 83/168 (49%), Positives = 102/168 (60%), Gaps = 9/168 (5%)
 Frame = +3

Query: 3    RKRKEVVYADTLSDLQWTRAVENGQDISKLSAKGKRR---DRLPVDSHAQASEDIGAXXX 173
            RKRK+V+YADTLS+LQW +A+ENG D+SKLSAKGKRR   D L  DS AQAS+D GA   
Sbjct: 936  RKRKDVIYADTLSELQWMQAMENGGDMSKLSAKGKRRESRDHLSSDSIAQASDDTGADES 995

Query: 174  XXXXXXXXXXXX------DTFNVTPASKRLKHDEINSQKREKEDVRFSGSNEHMFSWNTH 335
                              D+F+VTP+SKR K +  N QK   EDV  SG ++ +FSWN H
Sbjct: 996  ILQSRAKIVPTENDRTWEDSFHVTPSSKRFKPEGTNFQKHAHEDVSGSGLDQPVFSWNIH 1055

Query: 336  RKKRSSYIGQGSLSDNRGQNSNGXXXXXXXXXXXXXXXXXXNGRANWN 479
            +KKRSS++GQGS S++RG NS                    NGRANWN
Sbjct: 1056 KKKRSSHLGQGSASESRGHNS--------------------NGRANWN 1083


Top