BLASTX nr result
ID: Glycyrrhiza23_contig00022563
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00022563
(287 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003631084.1| Pentatricopeptide repeat-containing protein ... 127 1e-27
gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula] 127 1e-27
ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containi... 118 4e-25
ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containi... 101 6e-20
ref|XP_002534168.1| pentatricopeptide repeat-containing protein,... 100 1e-19
>ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 980
Score = 127 bits (318), Expect = 1e-27
Identities = 59/67 (88%), Positives = 64/67 (95%)
Frame = -2
Query: 202 NNKPRVKDPDIVSWNKAISTHMRNGYCDSALTVFNTMPRRSSVSYNAMISGYLRNAKFTL 23
NNKPRVKDPDI+ WNKAISTHMRNG+CDSAL VFNTMPRRSSVSYNAMISGYLRN+KF L
Sbjct: 39 NNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNL 98
Query: 22 ARDLFDK 2
AR+LFD+
Sbjct: 99 ARNLFDQ 105
Score = 61.6 bits (148), Expect = 6e-08
Identities = 25/57 (43%), Positives = 40/57 (70%)
Frame = -2
Query: 175 DIVSWNKAISTHMRNGYCDSALTVFNTMPRRSSVSYNAMISGYLRNAKFTLARDLFD 5
D+ +W +S +++NG D A T F+ MP ++ VSYNAMI+GY++ K +AR+LF+
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFE 321
Score = 57.0 bits (136), Expect = 2e-06
Identities = 23/59 (38%), Positives = 39/59 (66%)
Frame = -2
Query: 181 DPDIVSWNKAISTHMRNGYCDSALTVFNTMPRRSSVSYNAMISGYLRNAKFTLARDLFD 5
+ D+VSWN +S + +NGY D A VF+ MP ++S+S+N +++ Y+ N + A LF+
Sbjct: 139 EKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE 197
>gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 127 bits (318), Expect = 1e-27
Identities = 59/67 (88%), Positives = 64/67 (95%)
Frame = -2
Query: 202 NNKPRVKDPDIVSWNKAISTHMRNGYCDSALTVFNTMPRRSSVSYNAMISGYLRNAKFTL 23
NNKPRVKDPDI+ WNKAISTHMRNG+CDSAL VFNTMPRRSSVSYNAMISGYLRN+KF L
Sbjct: 39 NNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNL 98
Query: 22 ARDLFDK 2
AR+LFD+
Sbjct: 99 ARNLFDQ 105
Score = 61.6 bits (148), Expect = 6e-08
Identities = 25/57 (43%), Positives = 40/57 (70%)
Frame = -2
Query: 175 DIVSWNKAISTHMRNGYCDSALTVFNTMPRRSSVSYNAMISGYLRNAKFTLARDLFD 5
D+ +W +S +++NG D A T F+ MP ++ VSYNAMI+GY++ K +AR+LF+
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFE 321
Score = 57.0 bits (136), Expect = 2e-06
Identities = 23/59 (38%), Positives = 39/59 (66%)
Frame = -2
Query: 181 DPDIVSWNKAISTHMRNGYCDSALTVFNTMPRRSSVSYNAMISGYLRNAKFTLARDLFD 5
+ D+VSWN +S + +NGY D A VF+ MP ++S+S+N +++ Y+ N + A LF+
Sbjct: 139 EKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE 197
>ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 118 bits (296), Expect = 4e-25
Identities = 55/63 (87%), Positives = 61/63 (96%)
Frame = -2
Query: 190 RVKDPDIVSWNKAISTHMRNGYCDSALTVFNTMPRRSSVSYNAMISGYLRNAKFTLARDL 11
+ KDPDIV+WNKAIS+HMRNG+CDSAL VFN+MPRRSSVSYNAMISGYLRNAKF+LARDL
Sbjct: 40 KFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDL 99
Query: 10 FDK 2
FDK
Sbjct: 100 FDK 102
Score = 61.2 bits (147), Expect = 8e-08
Identities = 25/57 (43%), Positives = 39/57 (68%)
Frame = -2
Query: 175 DIVSWNKAISTHMRNGYCDSALTVFNTMPRRSSVSYNAMISGYLRNAKFTLARDLFD 5
D+VSWN +S + +NG+ D A VFN MP R+S+S+N +++ Y+ N + AR LF+
Sbjct: 138 DVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFE 194
>ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 101 bits (252), Expect = 6e-20
Identities = 49/65 (75%), Positives = 54/65 (83%)
Frame = -2
Query: 196 KPRVKDPDIVSWNKAISTHMRNGYCDSALTVFNTMPRRSSVSYNAMISGYLRNAKFTLAR 17
KP +DP V KAISTHMRNG+CD AL VF+ MP R+SVSYNAMISGYLRNAKF+LAR
Sbjct: 25 KPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLAR 84
Query: 16 DLFDK 2
DLFDK
Sbjct: 85 DLFDK 89
Score = 58.5 bits (140), Expect = 5e-07
Identities = 23/59 (38%), Positives = 42/59 (71%)
Frame = -2
Query: 181 DPDIVSWNKAISTHMRNGYCDSALTVFNTMPRRSSVSYNAMISGYLRNAKFTLARDLFD 5
+ D+VSWN +S ++R+G+ D A VF+ MP ++S+S+N +++ Y+R+ + AR LF+
Sbjct: 123 EKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFE 181
>ref|XP_002534168.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223525755|gb|EEF28217.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 513
Score = 100 bits (250), Expect = 1e-19
Identities = 46/67 (68%), Positives = 54/67 (80%)
Frame = -2
Query: 202 NNKPRVKDPDIVSWNKAISTHMRNGYCDSALTVFNTMPRRSSVSYNAMISGYLRNAKFTL 23
N + D DIV+WN AI+THMRNG C SAL VFNTMPRRS+V+YNAMISGYL N +F L
Sbjct: 47 NESEKTTDSDIVNWNMAITTHMRNGQCHSALQVFNTMPRRSTVTYNAMISGYLSNGRFDL 106
Query: 22 ARDLFDK 2
AR++FDK
Sbjct: 107 AREMFDK 113
Score = 57.8 bits (138), Expect = 9e-07
Identities = 22/57 (38%), Positives = 42/57 (73%)
Frame = -2
Query: 175 DIVSWNKAISTHMRNGYCDSALTVFNTMPRRSSVSYNAMISGYLRNAKFTLARDLFD 5
D+ +W +S +++NG D A ++F+ MP ++SVS+NAMI+GY++ + +A++LF+
Sbjct: 273 DVFTWTAMVSGYVQNGMVDEARSIFDKMPEKNSVSWNAMIAGYVQCKRMDMAKELFE 329
Score = 55.5 bits (132), Expect = 5e-06
Identities = 25/63 (39%), Positives = 40/63 (63%)
Frame = -2
Query: 190 RVKDPDIVSWNKAISTHMRNGYCDSALTVFNTMPRRSSVSYNAMISGYLRNAKFTLARDL 11
++ + D+ +WN +S ++RN A +F MPRR VS+NAM+SGY +N AR++
Sbjct: 113 KMPERDLFTWNVMLSGYVRNKNLTDARGLFERMPRRDVVSWNAMLSGYAQNGFIAEAREI 172
Query: 10 FDK 2
FD+
Sbjct: 173 FDE 175